Protein Domain : IPR000268

Type:  Family Name:  DNA-directed RNA polymerase, subunit N/Rpb10
Description:  In eukaryotes, there are three different forms of DNA-dependent RNA polymerases () transcribing different sets of genes. Each class of RNA polymerase is an assemblage of ten to twelve different polypeptides. In archaebacteria, there is generally a single form of RNA polymerase which also consists of an oligomeric assemblage of 10 to 13 polypeptides. Archaebacterial subunit N (gene rpoN) [] is a small protein of about 8 kDa, it is evolutionary related [] to a 8.3 kDa component shared by all three forms ofeukaryotic RNA polymerases (gene Rpb10 in yeast and POLR2J in mammals) as well as to African swine fever virus(ASFV) protein CP80R [].This family includes both archaeal subunit N, also known as Rpo10 following the eukaryotic nomenclature [], and eukaryotic Rpb10. There is a conserved region which is located at the N-terminal extremity of these polymerase subunits; this region contains two cysteines that binds a zinc ion []. Short Name:  RNAP_N/Rpb10
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0 Child Features

1 Contains

DB identifier Type Name
IPR020789 Binding_site RNA polymerases, subunit N, zinc binding site

4 Cross Referencess

Identifier
PF01194
PIRSF005653
PD006539
MF_00250

0 Found In

3 GO Annotations

GO Term Gene Name
GO:0003677 IPR000268
GO:0003899 IPR000268
GO:0006351 IPR000268

3 Ontology Annotations

GO Term Gene Name
GO:0003677 IPR000268
GO:0003899 IPR000268
GO:0006351 IPR000268

0 Parent Features

603 Proteins

DB identifier UniProt Accession Secondary Identifier Organism Name Length
79899 D8QXA0 PAC:15405269 Selaginella moellendorffii 65  
evm.model.supercontig_12.279 PAC:16406835 Carica papaya 71  
30217.m000257 B9T3C0 PAC:16824108 Ricinus communis 76  
Cucsa.394310.1 PAC:16983174 Cucumis sativus 142  
Cucsa.163130.1 A0A0A0LPW4 PAC:16965784 Cucumis sativus 71  
Cucsa.286180.1 PAC:16974972 Cucumis sativus 87  
orange1.1g035172m A0A067GUJ6 PAC:18101882 Citrus sinensis 71  
AT1G11475.1 Q8LFJ6 PAC:19649962 Arabidopsis thaliana 71  
AT1G61700.1 Q9SYA6 PAC:19654143 Arabidopsis thaliana 71  
Thhalv10009269m V4MUM0 PAC:20186987 Eutrema salsugineum 71  
Thhalv10023792m V4KPG9 PAC:20200837 Eutrema salsugineum 71  
Ciclev10033492m V4SUL9 PAC:20802598 Citrus clementina 105  
Lus10038195 PAC:23158216 Linum usitatissimum 68  
Lus10013128 PAC:23164179 Linum usitatissimum 106  
Lus10008095 PAC:23169742 Linum usitatissimum 89  
Lus10025907 PAC:23177563 Linum usitatissimum 71  
Potri.003G102900.5 PAC:26999573 Populus trichocarpa 71  
Potri.003G102900.4 PAC:26999572 Populus trichocarpa 71  
Potri.003G102900.6 PAC:26999574 Populus trichocarpa 71  
Potri.003G102900.3 PAC:26999571 Populus trichocarpa 71  
Potri.003G102900.2 PAC:26999570 Populus trichocarpa 71  
Potri.003G102900.1 PAC:26999569 Populus trichocarpa 90  
Potri.006G136300.2 PAC:27004126 Populus trichocarpa 71  
Potri.006G136300.3 PAC:27004125 Populus trichocarpa 71  
Potri.006G136300.4 PAC:27004127 Populus trichocarpa 71  
Potri.006G136300.5 PAC:27004124 Populus trichocarpa 71  
Potri.006G136300.1 PAC:27004123 Populus trichocarpa 71  
Gorai.008G159800.2 PAC:26818404 Gossypium raimondii 71  
Gorai.008G159800.1 PAC:26818403 Gossypium raimondii 71  
Gorai.005G181100.1 PAC:26802730 Gossypium raimondii 71  

5 Publications

First Author Title Year Journal Volume Pages PubMed ID
            8045907
            7597027
            10841539
            19419240
            11831707