Protein Domain : IPR005996

Type:  Family Name:  Ribosomal protein L30, bacterial-type
Description:  Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ].Ribosomal protein L30 is one of the proteins from the large ribosomal subunit. L30 belongs to a family of ribosomal proteins which, on the basis of sequence similarities, groups bacteria and archaea L30, yeast mitochondrial L33, and Drosophila, slime mould, fungal and mammalian L7 ribosomal proteins. L30 from bacteria are small proteins of about 60 residues. This model describes bacterial, chlorplast and mitochondrial forms of ribosomal protein L30. Short Name:  Ribosomal_L30_bac-type

0 Child Features

1 Contains

DB identifier Type Name
IPR018038 Conserved_site Ribosomal protein L30, conserved site

3 Cross Referencess

Identifier
PIRSF002211
TIGR01308
MF_01371_B

0 Found In

3 GO Annotations

GO Term Gene Name
GO:0003735 IPR005996
GO:0006412 IPR005996
GO:0015934 IPR005996

3 Ontology Annotations

GO Term Gene Name
GO:0003735 IPR005996
GO:0006412 IPR005996
GO:0015934 IPR005996

0 Parent Features

414 Proteins

DB identifier UniProt Accession Secondary Identifier Organism Name Length
416842 D8S0K6 PAC:15403835 Selaginella moellendorffii 166  
evm.model.supercontig_12.255 PAC:16406809 Carica papaya 110  
29948.m000700 B9SH53 PAC:16814365 Ricinus communis 107  
Cucsa.309400.1 A0A0A0LN29 PAC:16976461 Cucumis sativus 108  
orange1.1g033963m A0A067FF83 PAC:18099951 Citrus sinensis 107  
AT5G55140.1 Q8L908 PAC:19670075 Arabidopsis thaliana 109  
Thhalv10015072m V4LKF7 PAC:20204964 Eutrema salsugineum 109  
Ciclev10009985m V4UT17 PAC:20792728 Citrus clementina 107  
Ciclev10009983m V4UT17 PAC:20792729 Citrus clementina 107  
Lus10004595 PAC:23149772 Linum usitatissimum 107  
Lus10031912 PAC:23161166 Linum usitatissimum 107  
Lus10011966 PAC:23161492 Linum usitatissimum 107  
Potri.014G157400.1 A0A2K1XWG6 PAC:27033036 Populus trichocarpa 107  
Potri.014G157400.2 A0A2K1XWG6 PAC:27033037 Populus trichocarpa 107  
Potri.002G225600.4 B9GTU5 PAC:27021719 Populus trichocarpa 106  
Potri.002G225600.3 B9GTU5 PAC:27021718 Populus trichocarpa 106  
Potri.002G225600.2 B9GTU5 PAC:27021717 Populus trichocarpa 106  
Potri.002G225600.7 B9GTU5 PAC:27021722 Populus trichocarpa 106  
Potri.002G225600.6 B9GTU5 PAC:27021721 Populus trichocarpa 106  
Potri.002G225600.5 B9GTU5 PAC:27021720 Populus trichocarpa 106  
Potri.002G225600.1 PAC:27021716 Populus trichocarpa 118  
Gorai.005G241500.2 A0A0D2NHU1 PAC:26801626 Gossypium raimondii 108  
Gorai.005G241500.1 A0A0D2NHU1 PAC:26801627 Gossypium raimondii 108  
54236 I0YQY6 PAC:27387962 Coccomyxa subellipsoidea C-169 90  
160229 C1MZE0 PAC:27344386 Micromonas pusilla CCMP1545 84  
32791 A4S0L8 PAC:27414216 Ostreococcus lucimarinus 83  
Thecc1EG030811t2 A0A061F5V3 PAC:27445090 Theobroma cacao 94  
Thecc1EG030811t1 A0A061F6F4 PAC:27445089 Theobroma cacao 108  
Araha.25676s0011.1.p PAC:28846779 Arabidopsis halleri 109  
Cagra.1629s0088.1.p PAC:28912641 Capsella grandiflora 109  

3 Publications

First Author Title Year Journal Volume Pages PubMed ID
            11297922
            11290319
            11114498