Gene : Thhalv10024934m.g E. salsugineum v1.0
Defline:  (1 of 1) PTHR11680:SF10 - SERINE HYDROXYMETHYLTRANSFERASE 1, MITOCHONDRIAL Genomic Order:  207
Name:  ? Thhalv10024934m.g Secondary Identifier:  ? PAC:20194654
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Sequence Feature Displayer

Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Esalsugineum GLYSYN-PWY Eutrema salsugineum pathologic  
Esalsugineum PWY-2161 Eutrema salsugineum pathologic  
Esalsugineum PWY-3841 Eutrema salsugineum pathologic  
Esalsugineum SER-GLYSYN-PWY Eutrema salsugineum pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thhalv10024934m.g 0.5kb upstream 0.5kb upstream 3901 true scaffold_1: 796442-800342 Eutrema salsugineum
Thhalv10024934m.g 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 796442-796941 Eutrema salsugineum
Thhalv10024934m.g 0.5kb downstream 0.5kb downstream 3901 true scaffold_1: 796942-800842 Eutrema salsugineum
Thhalv10024934m.g 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 800343-800842 Eutrema salsugineum
Thhalv10024934m.g 1.0kb upstream 1.0kb upstream 4401 true scaffold_1: 795942-800342 Eutrema salsugineum
Thhalv10024934m.g 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 795942-796941 Eutrema salsugineum
Thhalv10024934m.g 1.0kb downstream 1.0kb downstream 4401 true scaffold_1: 796942-801342 Eutrema salsugineum
Thhalv10024934m.g 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 800343-801342 Eutrema salsugineum
Thhalv10024934m.g 2.0kb upstream 2.0kb upstream 5401 true scaffold_1: 794942-800342 Eutrema salsugineum
Thhalv10024934m.g 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 794942-796941 Eutrema salsugineum
Thhalv10024934m.g 2.0kb downstream 2.0kb downstream 5401 true scaffold_1: 796942-802342 Eutrema salsugineum
Thhalv10024934m.g 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 800343-802342 Eutrema salsugineum
Thhalv10024934m.g 5.0kb upstream 5.0kb upstream 8401 true scaffold_1: 791942-800342 Eutrema salsugineum
Thhalv10024934m.g 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 791942-796941 Eutrema salsugineum
Thhalv10024934m.g 5.0kb downstream 5.0kb downstream 8401 true scaffold_1: 796942-805342 Eutrema salsugineum
Thhalv10024934m.g 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 800343-805342 Eutrema salsugineum
Thhalv10024934m.g 10.0kb upstream 10.0kb upstream 13401 true scaffold_1: 786942-800342 Eutrema salsugineum
Thhalv10024934m.g 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 786942-796941 Eutrema salsugineum
Thhalv10024934m.g 10.0kb downstream 10.0kb downstream 13401 true scaffold_1: 796942-810342 Eutrema salsugineum
Thhalv10024934m.g 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 800343-810342 Eutrema salsugineum

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122363634 5261 Brassicaceae View MSA
123832063 5264 Brassicales-Malvales View MSA
124337498 5266 SBM View MSA
124238878 5268 Malvidae View MSA
124064979 5270 Rosid View MSA
123747223 5271 Pentapetalae View MSA
122789073 5272 Eudicot View MSA
122045639 5273 Angiosperm View MSA
121346714 5274 Embryophyte View MSA
123424879 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain