Gene : Thhalv10025662m.g E. salsugineum v1.0
Defline:  (1 of 1) PTHR12001:SF41 - HETERODIMERIC GERANYLGERANYL PYROPHOSPHATE SYNTHASE SMALL SUBUNIT, CHLOROPLASTIC Genomic Order:  30
Name:  ? Thhalv10025662m.g Secondary Identifier:  ? PAC:20196024
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Esalsugineum PWY-5120 Eutrema salsugineum pathologic  
Esalsugineum PWY-5910 Eutrema salsugineum pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thhalv10025662m.g 0.5kb upstream 0.5kb upstream 1898 true scaffold_1: 109915-111812 Eutrema salsugineum
Thhalv10025662m.g 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 109915-110414 Eutrema salsugineum
Thhalv10025662m.g 0.5kb downstream 0.5kb downstream 1898 true scaffold_1: 110415-112312 Eutrema salsugineum
Thhalv10025662m.g 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 111813-112312 Eutrema salsugineum
Thhalv10025662m.g 1.0kb upstream 1.0kb upstream 2398 true scaffold_1: 109415-111812 Eutrema salsugineum
Thhalv10025662m.g 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 109415-110414 Eutrema salsugineum
Thhalv10025662m.g 1.0kb downstream 1.0kb downstream 2398 true scaffold_1: 110415-112812 Eutrema salsugineum
Thhalv10025662m.g 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 111813-112812 Eutrema salsugineum
Thhalv10025662m.g 2.0kb upstream 2.0kb upstream 3398 true scaffold_1: 108415-111812 Eutrema salsugineum
Thhalv10025662m.g 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 108415-110414 Eutrema salsugineum
Thhalv10025662m.g 2.0kb downstream 2.0kb downstream 3398 true scaffold_1: 110415-113812 Eutrema salsugineum
Thhalv10025662m.g 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 111813-113812 Eutrema salsugineum
Thhalv10025662m.g 5.0kb upstream 5.0kb upstream 6398 true scaffold_1: 105415-111812 Eutrema salsugineum
Thhalv10025662m.g 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 105415-110414 Eutrema salsugineum
Thhalv10025662m.g 5.0kb downstream 5.0kb downstream 6398 true scaffold_1: 110415-116812 Eutrema salsugineum
Thhalv10025662m.g 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 111813-116812 Eutrema salsugineum
Thhalv10025662m.g 10.0kb upstream 10.0kb upstream 11398 true scaffold_1: 100415-111812 Eutrema salsugineum
Thhalv10025662m.g 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 100415-110414 Eutrema salsugineum
Thhalv10025662m.g 10.0kb downstream 10.0kb downstream 11398 true scaffold_1: 110415-121812 Eutrema salsugineum
Thhalv10025662m.g 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 111813-121812 Eutrema salsugineum

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122371131 5261 Brassicaceae View MSA
123833321 5264 Brassicales-Malvales View MSA
124341620 5266 SBM View MSA
124238583 5268 Malvidae View MSA
124050179 5270 Rosid View MSA
123740099 5271 Pentapetalae View MSA
122794742 5272 Eudicot View MSA
122045849 5273 Angiosperm View MSA
121310516 5274 Embryophyte View MSA
123347979 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain