Gene : Thhalv10016984m.g E. salsugineum v1.0
Defline:  (1 of 4) PTHR10315:SF34 - E3 UBIQUITIN-PROTEIN LIGASE SINAT3-RELATED Genomic Order:  1576
Name:  ? Thhalv10016984m.g Secondary Identifier:  ? PAC:20180832
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Esalsugineum PWY-7511 Eutrema salsugineum pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thhalv10016984m.g 0.5kb upstream 0.5kb upstream 3327 true scaffold_10: 11468533-11471859 Eutrema salsugineum
Thhalv10016984m.g 0.5kb upstream 0.5kb upstream 500 false scaffold_10: 11471360-11471859 Eutrema salsugineum
Thhalv10016984m.g 0.5kb downstream 0.5kb downstream 3327 true scaffold_10: 11468033-11471359 Eutrema salsugineum
Thhalv10016984m.g 0.5kb downstream 0.5kb downstream 500 false scaffold_10: 11468033-11468532 Eutrema salsugineum
Thhalv10016984m.g 1.0kb upstream 1.0kb upstream 3827 true scaffold_10: 11468533-11472359 Eutrema salsugineum
Thhalv10016984m.g 1.0kb upstream 1.0kb upstream 1000 false scaffold_10: 11471360-11472359 Eutrema salsugineum
Thhalv10016984m.g 1.0kb downstream 1.0kb downstream 3827 true scaffold_10: 11467533-11471359 Eutrema salsugineum
Thhalv10016984m.g 1.0kb downstream 1.0kb downstream 1000 false scaffold_10: 11467533-11468532 Eutrema salsugineum
Thhalv10016984m.g 2.0kb upstream 2.0kb upstream 4827 true scaffold_10: 11468533-11473359 Eutrema salsugineum
Thhalv10016984m.g 2.0kb upstream 2.0kb upstream 2000 false scaffold_10: 11471360-11473359 Eutrema salsugineum
Thhalv10016984m.g 2.0kb downstream 2.0kb downstream 4827 true scaffold_10: 11466533-11471359 Eutrema salsugineum
Thhalv10016984m.g 2.0kb downstream 2.0kb downstream 2000 false scaffold_10: 11466533-11468532 Eutrema salsugineum
Thhalv10016984m.g 5.0kb upstream 5.0kb upstream 7827 true scaffold_10: 11468533-11476359 Eutrema salsugineum
Thhalv10016984m.g 5.0kb upstream 5.0kb upstream 5000 false scaffold_10: 11471360-11476359 Eutrema salsugineum
Thhalv10016984m.g 5.0kb downstream 5.0kb downstream 7827 true scaffold_10: 11463533-11471359 Eutrema salsugineum
Thhalv10016984m.g 5.0kb downstream 5.0kb downstream 5000 false scaffold_10: 11463533-11468532 Eutrema salsugineum
Thhalv10016984m.g 10.0kb upstream 10.0kb upstream 12827 true scaffold_10: 11468533-11481359 Eutrema salsugineum
Thhalv10016984m.g 10.0kb upstream 10.0kb upstream 10000 false scaffold_10: 11471360-11481359 Eutrema salsugineum
Thhalv10016984m.g 10.0kb downstream 10.0kb downstream 12827 true scaffold_10: 11458533-11471359 Eutrema salsugineum
Thhalv10016984m.g 10.0kb downstream 10.0kb downstream 10000 false scaffold_10: 11458533-11468532 Eutrema salsugineum

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122375440 5261 Brassicaceae View MSA
123800955 5264 Brassicales-Malvales View MSA
124298307 5266 SBM View MSA
124149979 5268 Malvidae View MSA
124072834 5270 Rosid View MSA
123746623 5271 Pentapetalae View MSA
122796827 5272 Eudicot View MSA
122050638 5273 Angiosperm View MSA
121350928 5274 Embryophyte View MSA
123381939 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain