Gene : Thhalv10001912m.g E. salsugineum v1.0
Defline:  (1 of 3) 6.1.1.21 - Histidine--tRNA ligase / Histidyl-tRNA synthetase Genomic Order:  77
Name:  ? Thhalv10001912m.g Secondary Identifier:  ? PAC:20200742
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Esalsugineum TRNA-CHARGING-PWY Eutrema salsugineum pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thhalv10001912m.g 0.5kb upstream 0.5kb upstream 3034 true scaffold_12: 1589961-1592994 Eutrema salsugineum
Thhalv10001912m.g 0.5kb upstream 0.5kb upstream 500 false scaffold_12: 1589961-1590460 Eutrema salsugineum
Thhalv10001912m.g 0.5kb downstream 0.5kb downstream 3034 true scaffold_12: 1590461-1593494 Eutrema salsugineum
Thhalv10001912m.g 0.5kb downstream 0.5kb downstream 500 false scaffold_12: 1592995-1593494 Eutrema salsugineum
Thhalv10001912m.g 1.0kb upstream 1.0kb upstream 3534 true scaffold_12: 1589461-1592994 Eutrema salsugineum
Thhalv10001912m.g 1.0kb upstream 1.0kb upstream 1000 false scaffold_12: 1589461-1590460 Eutrema salsugineum
Thhalv10001912m.g 1.0kb downstream 1.0kb downstream 3534 true scaffold_12: 1590461-1593994 Eutrema salsugineum
Thhalv10001912m.g 1.0kb downstream 1.0kb downstream 1000 false scaffold_12: 1592995-1593994 Eutrema salsugineum
Thhalv10001912m.g 2.0kb upstream 2.0kb upstream 4534 true scaffold_12: 1588461-1592994 Eutrema salsugineum
Thhalv10001912m.g 2.0kb upstream 2.0kb upstream 2000 false scaffold_12: 1588461-1590460 Eutrema salsugineum
Thhalv10001912m.g 2.0kb downstream 2.0kb downstream 4534 true scaffold_12: 1590461-1594994 Eutrema salsugineum
Thhalv10001912m.g 2.0kb downstream 2.0kb downstream 2000 false scaffold_12: 1592995-1594994 Eutrema salsugineum
Thhalv10001912m.g 5.0kb upstream 5.0kb upstream 7534 true scaffold_12: 1585461-1592994 Eutrema salsugineum
Thhalv10001912m.g 5.0kb upstream 5.0kb upstream 5000 false scaffold_12: 1585461-1590460 Eutrema salsugineum
Thhalv10001912m.g 5.0kb downstream 5.0kb downstream 7534 true scaffold_12: 1590461-1597994 Eutrema salsugineum
Thhalv10001912m.g 5.0kb downstream 5.0kb downstream 5000 false scaffold_12: 1592995-1597994 Eutrema salsugineum
Thhalv10001912m.g 10.0kb upstream 10.0kb upstream 12534 true scaffold_12: 1580461-1592994 Eutrema salsugineum
Thhalv10001912m.g 10.0kb upstream 10.0kb upstream 10000 false scaffold_12: 1580461-1590460 Eutrema salsugineum
Thhalv10001912m.g 10.0kb downstream 10.0kb downstream 12534 true scaffold_12: 1590461-1602994 Eutrema salsugineum
Thhalv10001912m.g 10.0kb downstream 10.0kb downstream 10000 false scaffold_12: 1592995-1602994 Eutrema salsugineum

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122357049 5261 Brassicaceae Singleton cluster - no MSA
123795124 5264 Brassicales-Malvales Singleton cluster - no MSA
124292917 5266 SBM Singleton cluster - no MSA
124145628 5268 Malvidae Singleton cluster - no MSA
124074510 5270 Rosid View MSA
123750553 5271 Pentapetalae View MSA
122793881 5272 Eudicot View MSA
122047537 5273 Angiosperm View MSA
121349127 5274 Embryophyte View MSA
123427860 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain