Gene : Thhalv10002015m.g E. salsugineum v1.0
Defline:  (1 of 2) PTHR22603:SF24 - PROTEIN CKA-1, ISOFORM A Genomic Order:  131
Name:  ? Thhalv10002015m.g Secondary Identifier:  ? PAC:20200706
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Esalsugineum PWY-3385 Eutrema salsugineum pathologic  
Esalsugineum PWY4FS-6 Eutrema salsugineum pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thhalv10002015m.g 0.5kb upstream 0.5kb upstream 4685 true scaffold_12: 3207401-3212085 Eutrema salsugineum
Thhalv10002015m.g 0.5kb upstream 0.5kb upstream 500 false scaffold_12: 3207401-3207900 Eutrema salsugineum
Thhalv10002015m.g 0.5kb downstream 0.5kb downstream 4685 true scaffold_12: 3207901-3212585 Eutrema salsugineum
Thhalv10002015m.g 0.5kb downstream 0.5kb downstream 500 false scaffold_12: 3212086-3212585 Eutrema salsugineum
Thhalv10002015m.g 1.0kb upstream 1.0kb upstream 5185 true scaffold_12: 3206901-3212085 Eutrema salsugineum
Thhalv10002015m.g 1.0kb upstream 1.0kb upstream 1000 false scaffold_12: 3206901-3207900 Eutrema salsugineum
Thhalv10002015m.g 1.0kb downstream 1.0kb downstream 5185 true scaffold_12: 3207901-3213085 Eutrema salsugineum
Thhalv10002015m.g 1.0kb downstream 1.0kb downstream 1000 false scaffold_12: 3212086-3213085 Eutrema salsugineum
Thhalv10002015m.g 2.0kb upstream 2.0kb upstream 6185 true scaffold_12: 3205901-3212085 Eutrema salsugineum
Thhalv10002015m.g 2.0kb upstream 2.0kb upstream 2000 false scaffold_12: 3205901-3207900 Eutrema salsugineum
Thhalv10002015m.g 2.0kb downstream 2.0kb downstream 6185 true scaffold_12: 3207901-3214085 Eutrema salsugineum
Thhalv10002015m.g 2.0kb downstream 2.0kb downstream 2000 false scaffold_12: 3212086-3214085 Eutrema salsugineum
Thhalv10002015m.g 5.0kb upstream 5.0kb upstream 9185 true scaffold_12: 3202901-3212085 Eutrema salsugineum
Thhalv10002015m.g 5.0kb upstream 5.0kb upstream 5000 false scaffold_12: 3202901-3207900 Eutrema salsugineum
Thhalv10002015m.g 5.0kb downstream 5.0kb downstream 9185 true scaffold_12: 3207901-3217085 Eutrema salsugineum
Thhalv10002015m.g 5.0kb downstream 5.0kb downstream 5000 false scaffold_12: 3212086-3217085 Eutrema salsugineum
Thhalv10002015m.g 10.0kb upstream 10.0kb upstream 14185 true scaffold_12: 3197901-3212085 Eutrema salsugineum
Thhalv10002015m.g 10.0kb upstream 10.0kb upstream 10000 false scaffold_12: 3197901-3207900 Eutrema salsugineum
Thhalv10002015m.g 10.0kb downstream 10.0kb downstream 14185 true scaffold_12: 3207901-3222085 Eutrema salsugineum
Thhalv10002015m.g 10.0kb downstream 10.0kb downstream 10000 false scaffold_12: 3212086-3222085 Eutrema salsugineum

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122362020 5261 Brassicaceae View MSA
123831797 5264 Brassicales-Malvales View MSA
124338804 5266 SBM View MSA
124248672 5268 Malvidae View MSA
124069180 5270 Rosid View MSA
123746925 5271 Pentapetalae View MSA
122797485 5272 Eudicot View MSA
122047896 5273 Angiosperm View MSA
121347088 5274 Embryophyte View MSA
123426626 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain