Gene : Thhalv10020319m.g E. salsugineum v1.0
Defline:  (1 of 1) PTHR22594:SF20 - LYSINE--TRNA LIGASE Genomic Order:  1082
Name:  ? Thhalv10020319m.g Secondary Identifier:  ? PAC:20182499
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Esalsugineum TRNA-CHARGING-PWY Eutrema salsugineum pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thhalv10020319m.g 0.5kb upstream 0.5kb upstream 4089 true scaffold_13: 4992537-4996625 Eutrema salsugineum
Thhalv10020319m.g 0.5kb upstream 0.5kb upstream 500 false scaffold_13: 4992537-4993036 Eutrema salsugineum
Thhalv10020319m.g 0.5kb downstream 0.5kb downstream 4089 true scaffold_13: 4993037-4997125 Eutrema salsugineum
Thhalv10020319m.g 0.5kb downstream 0.5kb downstream 500 false scaffold_13: 4996626-4997125 Eutrema salsugineum
Thhalv10020319m.g 1.0kb upstream 1.0kb upstream 4589 true scaffold_13: 4992037-4996625 Eutrema salsugineum
Thhalv10020319m.g 1.0kb upstream 1.0kb upstream 1000 false scaffold_13: 4992037-4993036 Eutrema salsugineum
Thhalv10020319m.g 1.0kb downstream 1.0kb downstream 4589 true scaffold_13: 4993037-4997625 Eutrema salsugineum
Thhalv10020319m.g 1.0kb downstream 1.0kb downstream 1000 false scaffold_13: 4996626-4997625 Eutrema salsugineum
Thhalv10020319m.g 2.0kb upstream 2.0kb upstream 5589 true scaffold_13: 4991037-4996625 Eutrema salsugineum
Thhalv10020319m.g 2.0kb upstream 2.0kb upstream 2000 false scaffold_13: 4991037-4993036 Eutrema salsugineum
Thhalv10020319m.g 2.0kb downstream 2.0kb downstream 5589 true scaffold_13: 4993037-4998625 Eutrema salsugineum
Thhalv10020319m.g 2.0kb downstream 2.0kb downstream 2000 false scaffold_13: 4996626-4998625 Eutrema salsugineum
Thhalv10020319m.g 5.0kb upstream 5.0kb upstream 8589 true scaffold_13: 4988037-4996625 Eutrema salsugineum
Thhalv10020319m.g 5.0kb upstream 5.0kb upstream 5000 false scaffold_13: 4988037-4993036 Eutrema salsugineum
Thhalv10020319m.g 5.0kb downstream 5.0kb downstream 8589 true scaffold_13: 4993037-5001625 Eutrema salsugineum
Thhalv10020319m.g 5.0kb downstream 5.0kb downstream 5000 false scaffold_13: 4996626-5001625 Eutrema salsugineum
Thhalv10020319m.g 10.0kb upstream 10.0kb upstream 13589 true scaffold_13: 4983037-4996625 Eutrema salsugineum
Thhalv10020319m.g 10.0kb upstream 10.0kb upstream 10000 false scaffold_13: 4983037-4993036 Eutrema salsugineum
Thhalv10020319m.g 10.0kb downstream 10.0kb downstream 13589 true scaffold_13: 4993037-5006625 Eutrema salsugineum
Thhalv10020319m.g 10.0kb downstream 10.0kb downstream 10000 false scaffold_13: 4996626-5006625 Eutrema salsugineum

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122363133 5261 Brassicaceae View MSA
123829318 5264 Brassicales-Malvales View MSA
124344689 5266 SBM View MSA
124239048 5268 Malvidae View MSA
124063653 5270 Rosid View MSA
123739204 5271 Pentapetalae View MSA
122788489 5272 Eudicot View MSA
122044302 5273 Angiosperm View MSA
121346599 5274 Embryophyte View MSA
123423817 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain