Gene : Thhalv10021478m.g E. salsugineum v1.0
Defline:  (1 of 11) PF05627 - Cleavage site for pathogenic type III effector avirulence factor Avr (AvrRpt-cleavage) Genomic Order:  1654
Name:  ? Thhalv10021478m.g Secondary Identifier:  ? PAC:20181762
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thhalv10021478m.g 0.5kb upstream 0.5kb upstream 2585 true scaffold_13: 7094920-7097504 Eutrema salsugineum
Thhalv10021478m.g 0.5kb upstream 0.5kb upstream 500 false scaffold_13: 7097005-7097504 Eutrema salsugineum
Thhalv10021478m.g 0.5kb downstream 0.5kb downstream 2585 true scaffold_13: 7094420-7097004 Eutrema salsugineum
Thhalv10021478m.g 0.5kb downstream 0.5kb downstream 500 false scaffold_13: 7094420-7094919 Eutrema salsugineum
Thhalv10021478m.g 1.0kb upstream 1.0kb upstream 3085 true scaffold_13: 7094920-7098004 Eutrema salsugineum
Thhalv10021478m.g 1.0kb upstream 1.0kb upstream 1000 false scaffold_13: 7097005-7098004 Eutrema salsugineum
Thhalv10021478m.g 1.0kb downstream 1.0kb downstream 3085 true scaffold_13: 7093920-7097004 Eutrema salsugineum
Thhalv10021478m.g 1.0kb downstream 1.0kb downstream 1000 false scaffold_13: 7093920-7094919 Eutrema salsugineum
Thhalv10021478m.g 2.0kb upstream 2.0kb upstream 4085 true scaffold_13: 7094920-7099004 Eutrema salsugineum
Thhalv10021478m.g 2.0kb upstream 2.0kb upstream 2000 false scaffold_13: 7097005-7099004 Eutrema salsugineum
Thhalv10021478m.g 2.0kb downstream 2.0kb downstream 4085 true scaffold_13: 7092920-7097004 Eutrema salsugineum
Thhalv10021478m.g 2.0kb downstream 2.0kb downstream 2000 false scaffold_13: 7092920-7094919 Eutrema salsugineum
Thhalv10021478m.g 5.0kb upstream 5.0kb upstream 7085 true scaffold_13: 7094920-7102004 Eutrema salsugineum
Thhalv10021478m.g 5.0kb upstream 5.0kb upstream 5000 false scaffold_13: 7097005-7102004 Eutrema salsugineum
Thhalv10021478m.g 5.0kb downstream 5.0kb downstream 7085 true scaffold_13: 7089920-7097004 Eutrema salsugineum
Thhalv10021478m.g 5.0kb downstream 5.0kb downstream 5000 false scaffold_13: 7089920-7094919 Eutrema salsugineum
Thhalv10021478m.g 10.0kb upstream 10.0kb upstream 12085 true scaffold_13: 7094920-7107004 Eutrema salsugineum
Thhalv10021478m.g 10.0kb upstream 10.0kb upstream 10000 false scaffold_13: 7097005-7107004 Eutrema salsugineum
Thhalv10021478m.g 10.0kb downstream 10.0kb downstream 12085 true scaffold_13: 7084920-7097004 Eutrema salsugineum
Thhalv10021478m.g 10.0kb downstream 10.0kb downstream 10000 false scaffold_13: 7084920-7094919 Eutrema salsugineum

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122360414 5261 Brassicaceae View MSA
123797948 5264 Brassicales-Malvales View MSA
124295645 5266 SBM View MSA
124148023 5268 Malvidae View MSA
123874109 5270 Rosid View MSA
123746059 5271 Pentapetalae View MSA
122771759 5272 Eudicot View MSA
122048165 5273 Angiosperm View MSA
121344169 5274 Embryophyte View MSA
123379991 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain