Gene : Thhalv10013234m.g E. salsugineum v1.0
Defline:  (1 of 1) PTHR13789:SF207 - LYCOPENE EPSILON CYCLASE, CHLOROPLASTIC Genomic Order:  2386
Name:  ? Thhalv10013234m.g Secondary Identifier:  ? PAC:20203646
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Esalsugineum CAROTENOID-PWY Eutrema salsugineum pathologic  
Esalsugineum PWY-5175 Eutrema salsugineum pathologic  
Esalsugineum PWY-5946 Eutrema salsugineum pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thhalv10013234m.g 0.5kb upstream 0.5kb upstream 3579 true scaffold_2: 9519573-9523151 Eutrema salsugineum
Thhalv10013234m.g 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 9522652-9523151 Eutrema salsugineum
Thhalv10013234m.g 0.5kb downstream 0.5kb downstream 3579 true scaffold_2: 9519073-9522651 Eutrema salsugineum
Thhalv10013234m.g 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 9519073-9519572 Eutrema salsugineum
Thhalv10013234m.g 1.0kb upstream 1.0kb upstream 4079 true scaffold_2: 9519573-9523651 Eutrema salsugineum
Thhalv10013234m.g 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 9522652-9523651 Eutrema salsugineum
Thhalv10013234m.g 1.0kb downstream 1.0kb downstream 4079 true scaffold_2: 9518573-9522651 Eutrema salsugineum
Thhalv10013234m.g 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 9518573-9519572 Eutrema salsugineum
Thhalv10013234m.g 2.0kb upstream 2.0kb upstream 5079 true scaffold_2: 9519573-9524651 Eutrema salsugineum
Thhalv10013234m.g 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 9522652-9524651 Eutrema salsugineum
Thhalv10013234m.g 2.0kb downstream 2.0kb downstream 5079 true scaffold_2: 9517573-9522651 Eutrema salsugineum
Thhalv10013234m.g 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 9517573-9519572 Eutrema salsugineum
Thhalv10013234m.g 5.0kb upstream 5.0kb upstream 8079 true scaffold_2: 9519573-9527651 Eutrema salsugineum
Thhalv10013234m.g 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 9522652-9527651 Eutrema salsugineum
Thhalv10013234m.g 5.0kb downstream 5.0kb downstream 8079 true scaffold_2: 9514573-9522651 Eutrema salsugineum
Thhalv10013234m.g 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 9514573-9519572 Eutrema salsugineum
Thhalv10013234m.g 10.0kb upstream 10.0kb upstream 13079 true scaffold_2: 9519573-9532651 Eutrema salsugineum
Thhalv10013234m.g 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 9522652-9532651 Eutrema salsugineum
Thhalv10013234m.g 10.0kb downstream 10.0kb downstream 13079 true scaffold_2: 9509573-9522651 Eutrema salsugineum
Thhalv10013234m.g 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 9509573-9519572 Eutrema salsugineum

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122379674 5261 Brassicaceae View MSA
123834922 5264 Brassicales-Malvales View MSA
124342530 5266 SBM View MSA
124243060 5268 Malvidae View MSA
124068333 5270 Rosid View MSA
123739919 5271 Pentapetalae View MSA
122791667 5272 Eudicot View MSA
122041543 5273 Angiosperm View MSA
121345455 5274 Embryophyte View MSA
123424108 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain