Gene : Thhalv10014175m.g E. salsugineum v1.0
Defline:  (1 of 1) PTHR10920:SF12 - TRNA (CYTIDINE(32)/GUANOSINE(34)-2'-O)-METHYLTRANSFERASE-RELATED Genomic Order:  77
Name:  ? Thhalv10014175m.g Secondary Identifier:  ? PAC:20206527
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Esalsugineum PWY-6829 Eutrema salsugineum pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thhalv10014175m.g 0.5kb upstream 0.5kb upstream 3234 true scaffold_2: 295492-298725 Eutrema salsugineum
Thhalv10014175m.g 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 295492-295991 Eutrema salsugineum
Thhalv10014175m.g 0.5kb downstream 0.5kb downstream 3234 true scaffold_2: 295992-299225 Eutrema salsugineum
Thhalv10014175m.g 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 298726-299225 Eutrema salsugineum
Thhalv10014175m.g 1.0kb upstream 1.0kb upstream 3734 true scaffold_2: 294992-298725 Eutrema salsugineum
Thhalv10014175m.g 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 294992-295991 Eutrema salsugineum
Thhalv10014175m.g 1.0kb downstream 1.0kb downstream 3734 true scaffold_2: 295992-299725 Eutrema salsugineum
Thhalv10014175m.g 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 298726-299725 Eutrema salsugineum
Thhalv10014175m.g 2.0kb upstream 2.0kb upstream 4734 true scaffold_2: 293992-298725 Eutrema salsugineum
Thhalv10014175m.g 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 293992-295991 Eutrema salsugineum
Thhalv10014175m.g 2.0kb downstream 2.0kb downstream 4734 true scaffold_2: 295992-300725 Eutrema salsugineum
Thhalv10014175m.g 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 298726-300725 Eutrema salsugineum
Thhalv10014175m.g 5.0kb upstream 5.0kb upstream 7734 true scaffold_2: 290992-298725 Eutrema salsugineum
Thhalv10014175m.g 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 290992-295991 Eutrema salsugineum
Thhalv10014175m.g 5.0kb downstream 5.0kb downstream 7734 true scaffold_2: 295992-303725 Eutrema salsugineum
Thhalv10014175m.g 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 298726-303725 Eutrema salsugineum
Thhalv10014175m.g 10.0kb upstream 10.0kb upstream 12734 true scaffold_2: 285992-298725 Eutrema salsugineum
Thhalv10014175m.g 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 285992-295991 Eutrema salsugineum
Thhalv10014175m.g 10.0kb downstream 10.0kb downstream 12734 true scaffold_2: 295992-308725 Eutrema salsugineum
Thhalv10014175m.g 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 298726-308725 Eutrema salsugineum

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122373668 5261 Brassicaceae View MSA
123831274 5264 Brassicales-Malvales View MSA
124345014 5266 SBM View MSA
124239012 5268 Malvidae View MSA
124067188 5270 Rosid View MSA
123742065 5271 Pentapetalae View MSA
122791552 5272 Eudicot View MSA
122044785 5273 Angiosperm View MSA
121347520 5274 Embryophyte View MSA
123424894 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain