Gene : Thhalv10015942m.g E. salsugineum v1.0
Defline:  (1 of 1) PF00152//PF14244 - tRNA synthetases class II (D, K and N) (tRNA-synt_2) // gag-polypeptide of LTR copia-type (UBN2_3) Genomic Order:  2390
Name:  ? Thhalv10015942m.g Secondary Identifier:  ? PAC:20206452
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Esalsugineum TRNA-CHARGING-PWY Eutrema salsugineum pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thhalv10015942m.g 0.5kb upstream 0.5kb upstream 2992 true scaffold_2: 9542864-9545855 Eutrema salsugineum
Thhalv10015942m.g 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 9545356-9545855 Eutrema salsugineum
Thhalv10015942m.g 0.5kb downstream 0.5kb downstream 2992 true scaffold_2: 9542364-9545355 Eutrema salsugineum
Thhalv10015942m.g 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 9542364-9542863 Eutrema salsugineum
Thhalv10015942m.g 1.0kb upstream 1.0kb upstream 3492 true scaffold_2: 9542864-9546355 Eutrema salsugineum
Thhalv10015942m.g 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 9545356-9546355 Eutrema salsugineum
Thhalv10015942m.g 1.0kb downstream 1.0kb downstream 3492 true scaffold_2: 9541864-9545355 Eutrema salsugineum
Thhalv10015942m.g 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 9541864-9542863 Eutrema salsugineum
Thhalv10015942m.g 2.0kb upstream 2.0kb upstream 4492 true scaffold_2: 9542864-9547355 Eutrema salsugineum
Thhalv10015942m.g 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 9545356-9547355 Eutrema salsugineum
Thhalv10015942m.g 2.0kb downstream 2.0kb downstream 4492 true scaffold_2: 9540864-9545355 Eutrema salsugineum
Thhalv10015942m.g 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 9540864-9542863 Eutrema salsugineum
Thhalv10015942m.g 5.0kb upstream 5.0kb upstream 7492 true scaffold_2: 9542864-9550355 Eutrema salsugineum
Thhalv10015942m.g 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 9545356-9550355 Eutrema salsugineum
Thhalv10015942m.g 5.0kb downstream 5.0kb downstream 7492 true scaffold_2: 9537864-9545355 Eutrema salsugineum
Thhalv10015942m.g 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 9537864-9542863 Eutrema salsugineum
Thhalv10015942m.g 10.0kb upstream 10.0kb upstream 12492 true scaffold_2: 9542864-9555355 Eutrema salsugineum
Thhalv10015942m.g 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 9545356-9555355 Eutrema salsugineum
Thhalv10015942m.g 10.0kb downstream 10.0kb downstream 12492 true scaffold_2: 9532864-9545355 Eutrema salsugineum
Thhalv10015942m.g 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 9532864-9542863 Eutrema salsugineum

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122373469 5261 Brassicaceae View MSA
123830124 5264 Brassicales-Malvales View MSA
124340774 5266 SBM View MSA
124240572 5268 Malvidae View MSA
124066804 5270 Rosid View MSA
123746132 5271 Pentapetalae View MSA
122792438 5272 Eudicot View MSA
122047949 5273 Angiosperm View MSA
121349506 5274 Embryophyte View MSA
123428007 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain