Gene : Thhalv10015980m.g E. salsugineum v1.0
Defline:  (1 of 11) PF05627 - Cleavage site for pathogenic type III effector avirulence factor Avr (AvrRpt-cleavage) Genomic Order:  2522
Name:  ? Thhalv10015980m.g Secondary Identifier:  ? PAC:20205968
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thhalv10015980m.g 0.5kb upstream 0.5kb upstream 882 true scaffold_2: 10209908-10210789 Eutrema salsugineum
Thhalv10015980m.g 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 10210290-10210789 Eutrema salsugineum
Thhalv10015980m.g 0.5kb downstream 0.5kb downstream 882 true scaffold_2: 10209408-10210289 Eutrema salsugineum
Thhalv10015980m.g 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 10209408-10209907 Eutrema salsugineum
Thhalv10015980m.g 1.0kb upstream 1.0kb upstream 1382 true scaffold_2: 10209908-10211289 Eutrema salsugineum
Thhalv10015980m.g 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 10210290-10211289 Eutrema salsugineum
Thhalv10015980m.g 1.0kb downstream 1.0kb downstream 1382 true scaffold_2: 10208908-10210289 Eutrema salsugineum
Thhalv10015980m.g 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 10208908-10209907 Eutrema salsugineum
Thhalv10015980m.g 2.0kb upstream 2.0kb upstream 2382 true scaffold_2: 10209908-10212289 Eutrema salsugineum
Thhalv10015980m.g 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 10210290-10212289 Eutrema salsugineum
Thhalv10015980m.g 2.0kb downstream 2.0kb downstream 2382 true scaffold_2: 10207908-10210289 Eutrema salsugineum
Thhalv10015980m.g 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 10207908-10209907 Eutrema salsugineum
Thhalv10015980m.g 5.0kb upstream 5.0kb upstream 5382 true scaffold_2: 10209908-10215289 Eutrema salsugineum
Thhalv10015980m.g 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 10210290-10215289 Eutrema salsugineum
Thhalv10015980m.g 5.0kb downstream 5.0kb downstream 5382 true scaffold_2: 10204908-10210289 Eutrema salsugineum
Thhalv10015980m.g 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 10204908-10209907 Eutrema salsugineum
Thhalv10015980m.g 10.0kb upstream 10.0kb upstream 10382 true scaffold_2: 10209908-10220289 Eutrema salsugineum
Thhalv10015980m.g 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 10210290-10220289 Eutrema salsugineum
Thhalv10015980m.g 10.0kb downstream 10.0kb downstream 10382 true scaffold_2: 10199908-10210289 Eutrema salsugineum
Thhalv10015980m.g 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 10199908-10209907 Eutrema salsugineum

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122380440 5261 Brassicaceae View MSA
123838227 5264 Brassicales-Malvales View MSA
124322418 5266 SBM View MSA
124169138 5268 Malvidae View MSA
124074284 5270 Rosid View MSA
123751462 5271 Pentapetalae View MSA
122795351 5272 Eudicot View MSA
122048962 5273 Angiosperm View MSA
121311190 5274 Embryophyte View MSA
123348519 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain