Gene : Thhalv10028544m.g E. salsugineum v1.0
Defline:  (1 of 1) PTHR10742:SF294 - PROTOPORPHYRINOGEN OXIDASE 1, CHLOROPLASTIC Genomic Order:  159
Name:  ? Thhalv10028544m.g Secondary Identifier:  ? PAC:20197115
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Esalsugineum CHLOROPHYLL-SYN Eutrema salsugineum pathologic  
Esalsugineum HEME-BIOSYNTHESIS-II Eutrema salsugineum pathologic  
Esalsugineum PWY-5918 Eutrema salsugineum pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thhalv10028544m.g 0.5kb upstream 0.5kb upstream 4602 true scaffold_3: 754662-759263 Eutrema salsugineum
Thhalv10028544m.g 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 754662-755161 Eutrema salsugineum
Thhalv10028544m.g 0.5kb downstream 0.5kb downstream 4602 true scaffold_3: 755162-759763 Eutrema salsugineum
Thhalv10028544m.g 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 759264-759763 Eutrema salsugineum
Thhalv10028544m.g 1.0kb upstream 1.0kb upstream 5102 true scaffold_3: 754162-759263 Eutrema salsugineum
Thhalv10028544m.g 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 754162-755161 Eutrema salsugineum
Thhalv10028544m.g 1.0kb downstream 1.0kb downstream 5102 true scaffold_3: 755162-760263 Eutrema salsugineum
Thhalv10028544m.g 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 759264-760263 Eutrema salsugineum
Thhalv10028544m.g 2.0kb upstream 2.0kb upstream 6102 true scaffold_3: 753162-759263 Eutrema salsugineum
Thhalv10028544m.g 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 753162-755161 Eutrema salsugineum
Thhalv10028544m.g 2.0kb downstream 2.0kb downstream 6102 true scaffold_3: 755162-761263 Eutrema salsugineum
Thhalv10028544m.g 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 759264-761263 Eutrema salsugineum
Thhalv10028544m.g 5.0kb upstream 5.0kb upstream 9102 true scaffold_3: 750162-759263 Eutrema salsugineum
Thhalv10028544m.g 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 750162-755161 Eutrema salsugineum
Thhalv10028544m.g 5.0kb downstream 5.0kb downstream 9102 true scaffold_3: 755162-764263 Eutrema salsugineum
Thhalv10028544m.g 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 759264-764263 Eutrema salsugineum
Thhalv10028544m.g 10.0kb upstream 10.0kb upstream 14102 true scaffold_3: 745162-759263 Eutrema salsugineum
Thhalv10028544m.g 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 745162-755161 Eutrema salsugineum
Thhalv10028544m.g 10.0kb downstream 10.0kb downstream 14102 true scaffold_3: 755162-769263 Eutrema salsugineum
Thhalv10028544m.g 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 759264-769263 Eutrema salsugineum

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122372816 5261 Brassicaceae View MSA
123832763 5264 Brassicales-Malvales View MSA
124343518 5266 SBM View MSA
124242274 5268 Malvidae View MSA
124065931 5270 Rosid View MSA
123747490 5271 Pentapetalae View MSA
122787686 5272 Eudicot View MSA
122041725 5273 Angiosperm View MSA
121347394 5274 Embryophyte View MSA
123424000 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain