Gene : Thhalv10002979m.g E. salsugineum v1.0
Defline:  (1 of 17) PF14244 - gag-polypeptide of LTR copia-type (UBN2_3) Genomic Order:  628
Name:  ? Thhalv10002979m.g Secondary Identifier:  ? PAC:20196774
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thhalv10002979m.g 0.5kb upstream 0.5kb upstream 812 true scaffold_4: 11427630-11428441 Eutrema salsugineum
Thhalv10002979m.g 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 11427630-11428129 Eutrema salsugineum
Thhalv10002979m.g 0.5kb downstream 0.5kb downstream 812 true scaffold_4: 11428130-11428941 Eutrema salsugineum
Thhalv10002979m.g 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 11428442-11428941 Eutrema salsugineum
Thhalv10002979m.g 1.0kb upstream 1.0kb upstream 1312 true scaffold_4: 11427130-11428441 Eutrema salsugineum
Thhalv10002979m.g 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 11427130-11428129 Eutrema salsugineum
Thhalv10002979m.g 1.0kb downstream 1.0kb downstream 1312 true scaffold_4: 11428130-11429441 Eutrema salsugineum
Thhalv10002979m.g 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 11428442-11429441 Eutrema salsugineum
Thhalv10002979m.g 2.0kb upstream 2.0kb upstream 2312 true scaffold_4: 11426130-11428441 Eutrema salsugineum
Thhalv10002979m.g 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 11426130-11428129 Eutrema salsugineum
Thhalv10002979m.g 2.0kb downstream 2.0kb downstream 2312 true scaffold_4: 11428130-11430441 Eutrema salsugineum
Thhalv10002979m.g 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 11428442-11430441 Eutrema salsugineum
Thhalv10002979m.g 5.0kb upstream 5.0kb upstream 5312 true scaffold_4: 11423130-11428441 Eutrema salsugineum
Thhalv10002979m.g 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 11423130-11428129 Eutrema salsugineum
Thhalv10002979m.g 5.0kb downstream 5.0kb downstream 5312 true scaffold_4: 11428130-11433441 Eutrema salsugineum
Thhalv10002979m.g 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 11428442-11433441 Eutrema salsugineum
Thhalv10002979m.g 10.0kb upstream 10.0kb upstream 10312 true scaffold_4: 11418130-11428441 Eutrema salsugineum
Thhalv10002979m.g 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 11418130-11428129 Eutrema salsugineum
Thhalv10002979m.g 10.0kb downstream 10.0kb downstream 10312 true scaffold_4: 11428130-11438441 Eutrema salsugineum
Thhalv10002979m.g 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 11428442-11438441 Eutrema salsugineum

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122358542 5261 Brassicaceae Singleton cluster - no MSA
123796500 5264 Brassicales-Malvales Singleton cluster - no MSA
124350758 5266 SBM View MSA
124254257 5268 Malvidae View MSA
124074671 5270 Rosid View MSA
123753620 5271 Pentapetalae View MSA
122797847 5272 Eudicot View MSA
122051084 5273 Angiosperm View MSA
123429186 5275 Viridiplantae View MSA
121351752 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain