Gene : Thhalv10007073m.g E. salsugineum v1.0
Defline:  (1 of 2) PTHR10277//PTHR10277:SF42 - HOMOCITRATE SYNTHASE-RELATED Genomic Order:  1455
Name:  ? Thhalv10007073m.g Secondary Identifier:  ? PAC:20185552
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Esalsugineum BRANCHED-CHAIN-AA-SYN-PWY Eutrema salsugineum pathologic  
Esalsugineum LEUSYN-PWY Eutrema salsugineum pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thhalv10007073m.g 0.5kb upstream 0.5kb upstream 4413 true scaffold_5: 9137270-9141682 Eutrema salsugineum
Thhalv10007073m.g 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 9141183-9141682 Eutrema salsugineum
Thhalv10007073m.g 0.5kb downstream 0.5kb downstream 4413 true scaffold_5: 9136770-9141182 Eutrema salsugineum
Thhalv10007073m.g 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 9136770-9137269 Eutrema salsugineum
Thhalv10007073m.g 1.0kb upstream 1.0kb upstream 4913 true scaffold_5: 9137270-9142182 Eutrema salsugineum
Thhalv10007073m.g 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 9141183-9142182 Eutrema salsugineum
Thhalv10007073m.g 1.0kb downstream 1.0kb downstream 4913 true scaffold_5: 9136270-9141182 Eutrema salsugineum
Thhalv10007073m.g 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 9136270-9137269 Eutrema salsugineum
Thhalv10007073m.g 2.0kb upstream 2.0kb upstream 5913 true scaffold_5: 9137270-9143182 Eutrema salsugineum
Thhalv10007073m.g 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 9141183-9143182 Eutrema salsugineum
Thhalv10007073m.g 2.0kb downstream 2.0kb downstream 5913 true scaffold_5: 9135270-9141182 Eutrema salsugineum
Thhalv10007073m.g 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 9135270-9137269 Eutrema salsugineum
Thhalv10007073m.g 5.0kb upstream 5.0kb upstream 8913 true scaffold_5: 9137270-9146182 Eutrema salsugineum
Thhalv10007073m.g 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 9141183-9146182 Eutrema salsugineum
Thhalv10007073m.g 5.0kb downstream 5.0kb downstream 8913 true scaffold_5: 9132270-9141182 Eutrema salsugineum
Thhalv10007073m.g 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 9132270-9137269 Eutrema salsugineum
Thhalv10007073m.g 10.0kb upstream 10.0kb upstream 13913 true scaffold_5: 9137270-9151182 Eutrema salsugineum
Thhalv10007073m.g 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 9141183-9151182 Eutrema salsugineum
Thhalv10007073m.g 10.0kb downstream 10.0kb downstream 13913 true scaffold_5: 9127270-9141182 Eutrema salsugineum
Thhalv10007073m.g 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 9127270-9137269 Eutrema salsugineum

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122362049 5261 Brassicaceae View MSA
123837144 5264 Brassicales-Malvales View MSA
124322248 5266 SBM View MSA
124251393 5268 Malvidae View MSA
124073887 5270 Rosid View MSA
123749835 5271 Pentapetalae View MSA
122795041 5272 Eudicot View MSA
122042075 5273 Angiosperm View MSA
121343846 5274 Embryophyte View MSA
123424493 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain