Gene : Thhalv10009880m.g E. salsugineum v1.0
Defline:  (1 of 3) PTHR23382//PTHR23382:SF7 - MALATE DEHYDROGENASE Genomic Order:  2814
Name:  ? Thhalv10009880m.g Secondary Identifier:  ? PAC:20188581
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Sequence Feature Displayer

Ontology Annotation Displayer

7 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Esalsugineum GLUCONEO-PWY Eutrema salsugineum pathologic  
Esalsugineum GLYOXYLATE-BYPASS Eutrema salsugineum pathologic  
Esalsugineum PWY-5464 Eutrema salsugineum pathologic  
Esalsugineum PWY-561 Eutrema salsugineum pathologic  
Esalsugineum PWY-5690 Eutrema salsugineum pathologic  
Esalsugineum PWY66-399 Eutrema salsugineum pathologic  
Esalsugineum PWY-7115 Eutrema salsugineum pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thhalv10009880m.g 0.5kb upstream 0.5kb upstream 2567 true scaffold_5: 14430570-14433136 Eutrema salsugineum
Thhalv10009880m.g 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 14430570-14431069 Eutrema salsugineum
Thhalv10009880m.g 0.5kb downstream 0.5kb downstream 2567 true scaffold_5: 14431070-14433636 Eutrema salsugineum
Thhalv10009880m.g 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 14433137-14433636 Eutrema salsugineum
Thhalv10009880m.g 1.0kb upstream 1.0kb upstream 3067 true scaffold_5: 14430070-14433136 Eutrema salsugineum
Thhalv10009880m.g 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 14430070-14431069 Eutrema salsugineum
Thhalv10009880m.g 1.0kb downstream 1.0kb downstream 3067 true scaffold_5: 14431070-14434136 Eutrema salsugineum
Thhalv10009880m.g 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 14433137-14434136 Eutrema salsugineum
Thhalv10009880m.g 2.0kb upstream 2.0kb upstream 4067 true scaffold_5: 14429070-14433136 Eutrema salsugineum
Thhalv10009880m.g 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 14429070-14431069 Eutrema salsugineum
Thhalv10009880m.g 2.0kb downstream 2.0kb downstream 4067 true scaffold_5: 14431070-14435136 Eutrema salsugineum
Thhalv10009880m.g 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 14433137-14435136 Eutrema salsugineum
Thhalv10009880m.g 5.0kb upstream 5.0kb upstream 7067 true scaffold_5: 14426070-14433136 Eutrema salsugineum
Thhalv10009880m.g 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 14426070-14431069 Eutrema salsugineum
Thhalv10009880m.g 5.0kb downstream 5.0kb downstream 7067 true scaffold_5: 14431070-14438136 Eutrema salsugineum
Thhalv10009880m.g 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 14433137-14438136 Eutrema salsugineum
Thhalv10009880m.g 10.0kb upstream 10.0kb upstream 12067 true scaffold_5: 14421070-14433136 Eutrema salsugineum
Thhalv10009880m.g 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 14421070-14431069 Eutrema salsugineum
Thhalv10009880m.g 10.0kb downstream 10.0kb downstream 12067 true scaffold_5: 14431070-14443136 Eutrema salsugineum
Thhalv10009880m.g 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 14433137-14443136 Eutrema salsugineum

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122358848 5261 Brassicaceae Singleton cluster - no MSA
123796767 5264 Brassicales-Malvales Singleton cluster - no MSA
124294506 5266 SBM Singleton cluster - no MSA
124255671 5268 Malvidae View MSA
123953256 5270 Rosid View MSA
123530711 5271 Pentapetalae View MSA
122565660 5272 Eudicot View MSA
122050336 5273 Angiosperm View MSA
121345674 5274 Embryophyte View MSA
123426378 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain