Gene : Thhalv10003782m.g E. salsugineum v1.0
Defline:  (1 of 1) PTHR12526:SF17 - STARCH SYNTHASE 1, CHLOROPLASTIC/AMYLOPLASTIC Genomic Order:  795
Name:  ? Thhalv10003782m.g Secondary Identifier:  ? PAC:20200145
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Esalsugineum GLYCOGENSYNTH-PWY Eutrema salsugineum pathologic  
Esalsugineum PWY-622 Eutrema salsugineum pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thhalv10003782m.g 0.5kb upstream 0.5kb upstream 4751 true scaffold_6: 3152413-3157163 Eutrema salsugineum
Thhalv10003782m.g 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 3152413-3152912 Eutrema salsugineum
Thhalv10003782m.g 0.5kb downstream 0.5kb downstream 4751 true scaffold_6: 3152913-3157663 Eutrema salsugineum
Thhalv10003782m.g 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 3157164-3157663 Eutrema salsugineum
Thhalv10003782m.g 1.0kb upstream 1.0kb upstream 5251 true scaffold_6: 3151913-3157163 Eutrema salsugineum
Thhalv10003782m.g 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 3151913-3152912 Eutrema salsugineum
Thhalv10003782m.g 1.0kb downstream 1.0kb downstream 5251 true scaffold_6: 3152913-3158163 Eutrema salsugineum
Thhalv10003782m.g 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 3157164-3158163 Eutrema salsugineum
Thhalv10003782m.g 2.0kb upstream 2.0kb upstream 6251 true scaffold_6: 3150913-3157163 Eutrema salsugineum
Thhalv10003782m.g 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 3150913-3152912 Eutrema salsugineum
Thhalv10003782m.g 2.0kb downstream 2.0kb downstream 6251 true scaffold_6: 3152913-3159163 Eutrema salsugineum
Thhalv10003782m.g 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 3157164-3159163 Eutrema salsugineum
Thhalv10003782m.g 5.0kb upstream 5.0kb upstream 9251 true scaffold_6: 3147913-3157163 Eutrema salsugineum
Thhalv10003782m.g 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 3147913-3152912 Eutrema salsugineum
Thhalv10003782m.g 5.0kb downstream 5.0kb downstream 9251 true scaffold_6: 3152913-3162163 Eutrema salsugineum
Thhalv10003782m.g 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 3157164-3162163 Eutrema salsugineum
Thhalv10003782m.g 10.0kb upstream 10.0kb upstream 14251 true scaffold_6: 3142913-3157163 Eutrema salsugineum
Thhalv10003782m.g 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 3142913-3152912 Eutrema salsugineum
Thhalv10003782m.g 10.0kb downstream 10.0kb downstream 14251 true scaffold_6: 3152913-3167163 Eutrema salsugineum
Thhalv10003782m.g 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 3157164-3167163 Eutrema salsugineum

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122371005 5261 Brassicaceae View MSA
123838245 5264 Brassicales-Malvales View MSA
124341785 5266 SBM View MSA
124239444 5268 Malvidae View MSA
124060940 5270 Rosid View MSA
123737274 5271 Pentapetalae View MSA
122791286 5272 Eudicot View MSA
122042634 5273 Angiosperm View MSA
121343835 5274 Embryophyte View MSA
123426751 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain