Gene : Thhalv10004810m.g E. salsugineum v1.0
Defline:  (1 of 3) PTHR31843:SF2 - ALLENE OXIDE CYCLASE 1, CHLOROPLASTIC-RELATED Genomic Order:  1639
Name:  ? Thhalv10004810m.g Secondary Identifier:  ? PAC:20198795
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Esalsugineum PWY-735 Eutrema salsugineum pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thhalv10004810m.g 0.5kb upstream 0.5kb upstream 1795 true scaffold_6: 6647685-6649479 Eutrema salsugineum
Thhalv10004810m.g 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 6648980-6649479 Eutrema salsugineum
Thhalv10004810m.g 0.5kb downstream 0.5kb downstream 1795 true scaffold_6: 6647185-6648979 Eutrema salsugineum
Thhalv10004810m.g 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 6647185-6647684 Eutrema salsugineum
Thhalv10004810m.g 1.0kb upstream 1.0kb upstream 2295 true scaffold_6: 6647685-6649979 Eutrema salsugineum
Thhalv10004810m.g 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 6648980-6649979 Eutrema salsugineum
Thhalv10004810m.g 1.0kb downstream 1.0kb downstream 2295 true scaffold_6: 6646685-6648979 Eutrema salsugineum
Thhalv10004810m.g 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 6646685-6647684 Eutrema salsugineum
Thhalv10004810m.g 2.0kb upstream 2.0kb upstream 3295 true scaffold_6: 6647685-6650979 Eutrema salsugineum
Thhalv10004810m.g 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 6648980-6650979 Eutrema salsugineum
Thhalv10004810m.g 2.0kb downstream 2.0kb downstream 3295 true scaffold_6: 6645685-6648979 Eutrema salsugineum
Thhalv10004810m.g 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 6645685-6647684 Eutrema salsugineum
Thhalv10004810m.g 5.0kb upstream 5.0kb upstream 6295 true scaffold_6: 6647685-6653979 Eutrema salsugineum
Thhalv10004810m.g 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 6648980-6653979 Eutrema salsugineum
Thhalv10004810m.g 5.0kb downstream 5.0kb downstream 6295 true scaffold_6: 6642685-6648979 Eutrema salsugineum
Thhalv10004810m.g 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 6642685-6647684 Eutrema salsugineum
Thhalv10004810m.g 10.0kb upstream 10.0kb upstream 11295 true scaffold_6: 6647685-6658979 Eutrema salsugineum
Thhalv10004810m.g 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 6648980-6658979 Eutrema salsugineum
Thhalv10004810m.g 10.0kb downstream 10.0kb downstream 11295 true scaffold_6: 6637685-6648979 Eutrema salsugineum
Thhalv10004810m.g 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 6637685-6647684 Eutrema salsugineum

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122380510 5261 Brassicaceae View MSA
123828498 5264 Brassicales-Malvales View MSA
124339249 5266 SBM View MSA
124252758 5268 Malvidae View MSA
124066771 5270 Rosid View MSA
123739753 5271 Pentapetalae View MSA
122789032 5272 Eudicot View MSA
122045897 5273 Angiosperm View MSA
121350459 5274 Embryophyte View MSA
123426138 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain