Gene : Thhalv10004549m.g E. salsugineum v1.0
Defline:  (1 of 3) 5.4.99.5 - Chorismate mutase / Hydroxyphenylpyruvate synthase Genomic Order:  1346
Name:  ? Thhalv10004549m.g Secondary Identifier:  ? PAC:20200111
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Esalsugineum PWY-3461 Eutrema salsugineum pathologic  
Esalsugineum PWY-3462 Eutrema salsugineum pathologic  
Esalsugineum PWY-3481 Eutrema salsugineum pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thhalv10004549m.g 0.5kb upstream 0.5kb upstream 2596 true scaffold_6: 5419667-5422262 Eutrema salsugineum
Thhalv10004549m.g 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 5419667-5420166 Eutrema salsugineum
Thhalv10004549m.g 0.5kb downstream 0.5kb downstream 2596 true scaffold_6: 5420167-5422762 Eutrema salsugineum
Thhalv10004549m.g 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 5422263-5422762 Eutrema salsugineum
Thhalv10004549m.g 1.0kb upstream 1.0kb upstream 3096 true scaffold_6: 5419167-5422262 Eutrema salsugineum
Thhalv10004549m.g 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 5419167-5420166 Eutrema salsugineum
Thhalv10004549m.g 1.0kb downstream 1.0kb downstream 3096 true scaffold_6: 5420167-5423262 Eutrema salsugineum
Thhalv10004549m.g 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 5422263-5423262 Eutrema salsugineum
Thhalv10004549m.g 2.0kb upstream 2.0kb upstream 4096 true scaffold_6: 5418167-5422262 Eutrema salsugineum
Thhalv10004549m.g 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 5418167-5420166 Eutrema salsugineum
Thhalv10004549m.g 2.0kb downstream 2.0kb downstream 4096 true scaffold_6: 5420167-5424262 Eutrema salsugineum
Thhalv10004549m.g 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 5422263-5424262 Eutrema salsugineum
Thhalv10004549m.g 5.0kb upstream 5.0kb upstream 7096 true scaffold_6: 5415167-5422262 Eutrema salsugineum
Thhalv10004549m.g 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 5415167-5420166 Eutrema salsugineum
Thhalv10004549m.g 5.0kb downstream 5.0kb downstream 7096 true scaffold_6: 5420167-5427262 Eutrema salsugineum
Thhalv10004549m.g 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 5422263-5427262 Eutrema salsugineum
Thhalv10004549m.g 10.0kb upstream 10.0kb upstream 12096 true scaffold_6: 5410167-5422262 Eutrema salsugineum
Thhalv10004549m.g 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 5410167-5420166 Eutrema salsugineum
Thhalv10004549m.g 10.0kb downstream 10.0kb downstream 12096 true scaffold_6: 5420167-5432262 Eutrema salsugineum
Thhalv10004549m.g 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 5422263-5432262 Eutrema salsugineum

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041201 5273 Angiosperm View MSA
122372904 5261 Brassicaceae View MSA
123828372 5264 Brassicales-Malvales View MSA
124336779 5266 SBM View MSA
124252605 5268 Malvidae View MSA
124071158 5270 Rosid View MSA
123736644 5271 Pentapetalae View MSA
122792454 5272 Eudicot View MSA
121347234 5274 Embryophyte View MSA
123427559 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain