Gene : Thhalv10005223m.g E. salsugineum v1.0
Defline:  (1 of 11) PF05627 - Cleavage site for pathogenic type III effector avirulence factor Avr (AvrRpt-cleavage) Genomic Order:  442
Name:  ? Thhalv10005223m.g Secondary Identifier:  ? PAC:20200211
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thhalv10005223m.g 0.5kb upstream 0.5kb upstream 1026 true scaffold_6: 1691074-1692099 Eutrema salsugineum
Thhalv10005223m.g 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 1691074-1691573 Eutrema salsugineum
Thhalv10005223m.g 0.5kb downstream 0.5kb downstream 1026 true scaffold_6: 1691574-1692599 Eutrema salsugineum
Thhalv10005223m.g 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 1692100-1692599 Eutrema salsugineum
Thhalv10005223m.g 1.0kb upstream 1.0kb upstream 1526 true scaffold_6: 1690574-1692099 Eutrema salsugineum
Thhalv10005223m.g 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 1690574-1691573 Eutrema salsugineum
Thhalv10005223m.g 1.0kb downstream 1.0kb downstream 1526 true scaffold_6: 1691574-1693099 Eutrema salsugineum
Thhalv10005223m.g 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 1692100-1693099 Eutrema salsugineum
Thhalv10005223m.g 2.0kb upstream 2.0kb upstream 2526 true scaffold_6: 1689574-1692099 Eutrema salsugineum
Thhalv10005223m.g 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 1689574-1691573 Eutrema salsugineum
Thhalv10005223m.g 2.0kb downstream 2.0kb downstream 2526 true scaffold_6: 1691574-1694099 Eutrema salsugineum
Thhalv10005223m.g 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 1692100-1694099 Eutrema salsugineum
Thhalv10005223m.g 5.0kb upstream 5.0kb upstream 5526 true scaffold_6: 1686574-1692099 Eutrema salsugineum
Thhalv10005223m.g 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 1686574-1691573 Eutrema salsugineum
Thhalv10005223m.g 5.0kb downstream 5.0kb downstream 5526 true scaffold_6: 1691574-1697099 Eutrema salsugineum
Thhalv10005223m.g 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 1692100-1697099 Eutrema salsugineum
Thhalv10005223m.g 10.0kb upstream 10.0kb upstream 10526 true scaffold_6: 1681574-1692099 Eutrema salsugineum
Thhalv10005223m.g 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 1681574-1691573 Eutrema salsugineum
Thhalv10005223m.g 10.0kb downstream 10.0kb downstream 10526 true scaffold_6: 1691574-1702099 Eutrema salsugineum
Thhalv10005223m.g 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 1692100-1702099 Eutrema salsugineum

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122370428 5261 Brassicaceae View MSA
123839959 5264 Brassicales-Malvales View MSA
124345918 5266 SBM View MSA
124248769 5268 Malvidae View MSA
124074284 5270 Rosid View MSA
123751462 5271 Pentapetalae View MSA
122795351 5272 Eudicot View MSA
122048962 5273 Angiosperm View MSA
121311190 5274 Embryophyte View MSA
123348519 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain