Gene : Thhalv10018548m.g E. salsugineum v1.0
Defline:  (1 of 52) 3.2.1.15 - Polygalacturonase / Pectinase Genomic Order:  49
Name:  ? Thhalv10018548m.g Secondary Identifier:  ? PAC:20191880
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Esalsugineum PWY-1081 Eutrema salsugineum pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thhalv10018548m.g 0.5kb upstream 0.5kb upstream 2857 true scaffold_9: 171552-174408 Eutrema salsugineum
Thhalv10018548m.g 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 173909-174408 Eutrema salsugineum
Thhalv10018548m.g 0.5kb downstream 0.5kb downstream 2857 true scaffold_9: 171052-173908 Eutrema salsugineum
Thhalv10018548m.g 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 171052-171551 Eutrema salsugineum
Thhalv10018548m.g 1.0kb upstream 1.0kb upstream 3357 true scaffold_9: 171552-174908 Eutrema salsugineum
Thhalv10018548m.g 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 173909-174908 Eutrema salsugineum
Thhalv10018548m.g 1.0kb downstream 1.0kb downstream 3357 true scaffold_9: 170552-173908 Eutrema salsugineum
Thhalv10018548m.g 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 170552-171551 Eutrema salsugineum
Thhalv10018548m.g 2.0kb upstream 2.0kb upstream 4357 true scaffold_9: 171552-175908 Eutrema salsugineum
Thhalv10018548m.g 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 173909-175908 Eutrema salsugineum
Thhalv10018548m.g 2.0kb downstream 2.0kb downstream 4357 true scaffold_9: 169552-173908 Eutrema salsugineum
Thhalv10018548m.g 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 169552-171551 Eutrema salsugineum
Thhalv10018548m.g 5.0kb upstream 5.0kb upstream 7357 true scaffold_9: 171552-178908 Eutrema salsugineum
Thhalv10018548m.g 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 173909-178908 Eutrema salsugineum
Thhalv10018548m.g 5.0kb downstream 5.0kb downstream 7357 true scaffold_9: 166552-173908 Eutrema salsugineum
Thhalv10018548m.g 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 166552-171551 Eutrema salsugineum
Thhalv10018548m.g 10.0kb upstream 10.0kb upstream 12357 true scaffold_9: 171552-183908 Eutrema salsugineum
Thhalv10018548m.g 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 173909-183908 Eutrema salsugineum
Thhalv10018548m.g 10.0kb downstream 10.0kb downstream 12357 true scaffold_9: 161552-173908 Eutrema salsugineum
Thhalv10018548m.g 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 161552-171551 Eutrema salsugineum

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122375088 5261 Brassicaceae View MSA
123841126 5264 Brassicales-Malvales View MSA
124345334 5266 SBM View MSA
124254286 5268 Malvidae View MSA
124062237 5270 Rosid View MSA
123747899 5271 Pentapetalae View MSA
122789338 5272 Eudicot View MSA
122047278 5273 Angiosperm View MSA
121350352 5274 Embryophyte View MSA
123381691 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain