Gene : Thhalv10019165m.g E. salsugineum v1.0
Defline:  (1 of 1) PTHR34790:SF1 - PHOTOSYSTEM II CORE COMPLEX PROTEINS PSBY, CHLOROPLASTIC Genomic Order:  1344
Name:  ? Thhalv10019165m.g Secondary Identifier:  ? PAC:20192553
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Esalsugineum PHOTOALL-PWY Eutrema salsugineum pathologic  
Esalsugineum PWY-101 Eutrema salsugineum pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thhalv10019165m.g 0.5kb upstream 0.5kb upstream 1600 true scaffold_9: 6293598-6295197 Eutrema salsugineum
Thhalv10019165m.g 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 6293598-6294097 Eutrema salsugineum
Thhalv10019165m.g 0.5kb downstream 0.5kb downstream 1600 true scaffold_9: 6294098-6295697 Eutrema salsugineum
Thhalv10019165m.g 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 6295198-6295697 Eutrema salsugineum
Thhalv10019165m.g 1.0kb upstream 1.0kb upstream 2100 true scaffold_9: 6293098-6295197 Eutrema salsugineum
Thhalv10019165m.g 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 6293098-6294097 Eutrema salsugineum
Thhalv10019165m.g 1.0kb downstream 1.0kb downstream 2100 true scaffold_9: 6294098-6296197 Eutrema salsugineum
Thhalv10019165m.g 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 6295198-6296197 Eutrema salsugineum
Thhalv10019165m.g 2.0kb upstream 2.0kb upstream 3100 true scaffold_9: 6292098-6295197 Eutrema salsugineum
Thhalv10019165m.g 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 6292098-6294097 Eutrema salsugineum
Thhalv10019165m.g 2.0kb downstream 2.0kb downstream 3100 true scaffold_9: 6294098-6297197 Eutrema salsugineum
Thhalv10019165m.g 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 6295198-6297197 Eutrema salsugineum
Thhalv10019165m.g 5.0kb upstream 5.0kb upstream 6100 true scaffold_9: 6289098-6295197 Eutrema salsugineum
Thhalv10019165m.g 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 6289098-6294097 Eutrema salsugineum
Thhalv10019165m.g 5.0kb downstream 5.0kb downstream 6100 true scaffold_9: 6294098-6300197 Eutrema salsugineum
Thhalv10019165m.g 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 6295198-6300197 Eutrema salsugineum
Thhalv10019165m.g 10.0kb upstream 10.0kb upstream 11100 true scaffold_9: 6284098-6295197 Eutrema salsugineum
Thhalv10019165m.g 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 6284098-6294097 Eutrema salsugineum
Thhalv10019165m.g 10.0kb downstream 10.0kb downstream 11100 true scaffold_9: 6294098-6305197 Eutrema salsugineum
Thhalv10019165m.g 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 6295198-6305197 Eutrema salsugineum

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361908 5261 Brassicaceae View MSA
123839306 5264 Brassicales-Malvales View MSA
124346092 5266 SBM View MSA
124244103 5268 Malvidae View MSA
124068149 5270 Rosid View MSA
123737018 5271 Pentapetalae View MSA
122795977 5272 Eudicot View MSA
122044260 5273 Angiosperm View MSA
121349394 5274 Embryophyte View MSA
123426328 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain