Protein Domain : IPR005468

Type:  Family Name:  Avidin/streptavidin
Description:  Avidin [] is a minor constituent of egg white in several groups of oviparousvertebrates. Avidin, which was discovered in the 1920's, takes its name from the avidity with which it binds biotin. These two molecules bind so stronglythat is extremely difficult to separate them. Streptavidin is a protein produced by Streptomyces avidiniiwhich also binds biotin and whose sequence is evolutionary related to that of avidin.Avidin and streptavidin both form homotetrameric complexes of noncovalently associated chains. Each chain forms a very strong and specific non-covalentcomplex with one molecule of biotin.The three-dimensional structures of both streptavidin [, ] and avidin [] have been determined and revealed them to share a common fold: an eightstranded anti-parallel beta-barrel with a repeated +1 topology enclosing an internal ligand binding site.Fibropellins I and III [] are proteins that form the apical lamina of the seaurchin embryo, a component of the extracellular matrix. These two proteins have a modular structure composed of a CUB domain (see), followed by a variable number of EGF repeats and a C-terminal avidin-like domain. Short Name:  Avidin/str

1 Child Features

DB identifier Type Name
IPR005469 Family Avidin

1 Contains

DB identifier Type Name
IPR017889 Conserved_site Avidin-like, conserved site

4 Cross Referencess

Identifier
PF01382
PS51326
G3DSA:2.40.128.30
SSF50876

0 Found In

0 GO Annotation

0 Ontology Annotations

0 Parent Features

81 Proteins

DB identifier UniProt Accession Secondary Identifier Organism Name Length
Thhalv10009659m V4L743 PAC:20186220 Eutrema salsugineum 188  
Lus10036771 PAC:23171132 Linum usitatissimum 199  
Lus10019724 PAC:23139318 Linum usitatissimum 72  
Lus10037158 PAC:23152551 Linum usitatissimum 113  
Lus10035913 PAC:23140986 Linum usitatissimum 177  
Lus10030447 PAC:23140591 Linum usitatissimum 203  
Potri.006G092300.1 A0A2K1ZZF7 PAC:27006709 Populus trichocarpa 79  
Potri.010G166500.4 PAC:26979195 Populus trichocarpa 160  
SapurV1A.0001s1220.1.p PAC:31410458 Salix purpurea 78  
evm_27.model.AmTr_v1.0_scaffold00033.214 U5CWN7 PAC:31561833 Amborella trichopoda 252  
Traes_4BL_C72FC5141.5 PAC:31771457 Triticum aestivum 79  
Eucgr.A01540.1.p A0A059DF87 PAC:32047318 Eucalyptus grandis 454  
Prupe.1G277300.1.p M5XZG5 PAC:32120355 Prunus persica 199  
Bradi1g72910.2.p A0A2K2DUT8 PAC:32792019 Brachypodium distachyon 533  
Brdisv1ABR9_r1012335m.p PAC:33523016 Brachypodium distachyon ABR9 571  
Brdisv1Bis-11011679m.p PAC:33780264 Brachypodium distachyon Bis-1 571  
Brdisv1Bis-11011678m.p PAC:33780263 Brachypodium distachyon Bis-1 571  
Brdisv1Mon31010780m.p PAC:34296821 Brachypodium distachyon Mon3 571  
Brdisv1Arn11012332m.p PAC:34527887 Brachypodium distachyon Arn1 571  
Kaladp0076s0200.1.p PAC:35748119 Kalanchoe fedtschenkoi 520  
Tp57577_TGAC_v2_mRNA12353 PAC:35987352 Trifolium pratense 197  
DCAR_025910 PAC:36058324 Daucus carota 893  
Potri.006G092300.1.p A0A2K1ZZF7 PAC:37244881 Populus trichocarpa 79  
Podel.06G100900.1.p PAC:37326125 Populus deltoides WV94 79  
Bol038744 PAC:37353369 Brassica oleracea capitata 421  
AT2G20420.1 O82662 PAC:37380467 Arabidopsis thaliana 421  
Anaoc.0008s1188.1.p PAC:37559386 Anacardium occidentale 131  
HORVU7Hr1G107840.1 PAC:38521783 Hordeum vulgare 71  
Lsat_1_v5_gn_5_6920.1 A0A2J6KN66 PAC:38971989 Lactuca sativa 79  
Lsat_1_v5_gn_6_49920.1 A0A2J6JXI6 PAC:38938286 Lactuca sativa 90  

5 Publications

First Author Title Year Journal Volume Pages PubMed ID
            8500658
            2784773
            8515446
            2388586
            2928324