Gene : Ciclev10011841m.g C. clementina v1.0
Defline:  (1 of 1) PTHR31480:SF2 - PHYTOENE SYNTHASE, CHLOROPLASTIC Genomic Order:  1526
Name:  ? Ciclev10011841m.g Secondary Identifier:  ? PAC:20796333
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cclementina CAROTENOID-PWY Citrus clementina pathologic  
Cclementina PWY-6475 Citrus clementina pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Ciclev10011841m.g 0.5kb upstream 0.5kb upstream 6111 true scaffold_6: 21390477-21396587 Citrus clementina
Ciclev10011841m.g 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 21396088-21396587 Citrus clementina
Ciclev10011841m.g 0.5kb downstream 0.5kb downstream 6111 true scaffold_6: 21389977-21396087 Citrus clementina
Ciclev10011841m.g 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 21389977-21390476 Citrus clementina
Ciclev10011841m.g 1.0kb upstream 1.0kb upstream 6611 true scaffold_6: 21390477-21397087 Citrus clementina
Ciclev10011841m.g 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 21396088-21397087 Citrus clementina
Ciclev10011841m.g 1.0kb downstream 1.0kb downstream 6611 true scaffold_6: 21389477-21396087 Citrus clementina
Ciclev10011841m.g 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 21389477-21390476 Citrus clementina
Ciclev10011841m.g 2.0kb upstream 2.0kb upstream 7611 true scaffold_6: 21390477-21398087 Citrus clementina
Ciclev10011841m.g 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 21396088-21398087 Citrus clementina
Ciclev10011841m.g 2.0kb downstream 2.0kb downstream 7611 true scaffold_6: 21388477-21396087 Citrus clementina
Ciclev10011841m.g 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 21388477-21390476 Citrus clementina
Ciclev10011841m.g 5.0kb upstream 5.0kb upstream 10611 true scaffold_6: 21390477-21401087 Citrus clementina
Ciclev10011841m.g 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 21396088-21401087 Citrus clementina
Ciclev10011841m.g 5.0kb downstream 5.0kb downstream 10611 true scaffold_6: 21385477-21396087 Citrus clementina
Ciclev10011841m.g 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 21385477-21390476 Citrus clementina
Ciclev10011841m.g 10.0kb upstream 10.0kb upstream 15611 true scaffold_6: 21390477-21406087 Citrus clementina
Ciclev10011841m.g 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 21396088-21406087 Citrus clementina
Ciclev10011841m.g 10.0kb downstream 10.0kb downstream 15611 true scaffold_6: 21380477-21396087 Citrus clementina
Ciclev10011841m.g 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 21380477-21390476 Citrus clementina

8 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041269 5273 Angiosperm View MSA
124345575 5266 SBM View MSA
124251202 5268 Malvidae View MSA
124069921 5270 Rosid View MSA
123743557 5271 Pentapetalae View MSA
122795955 5272 Eudicot View MSA
121345575 5274 Embryophyte View MSA
123426823 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain