Gene : Ciclev10013900m.g C. clementina v1.0
Defline:  (1 of 3) 6.1.1.21 - Histidine--tRNA ligase / Histidyl-tRNA synthetase Genomic Order:  89
Name:  ? Ciclev10013900m.g Secondary Identifier:  ? PAC:20798468
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cclementina TRNA-CHARGING-PWY Citrus clementina pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Ciclev10013900m.g 0.5kb upstream 0.5kb upstream 3238 true scaffold_6: 2089780-2093017 Citrus clementina
Ciclev10013900m.g 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 2092518-2093017 Citrus clementina
Ciclev10013900m.g 0.5kb downstream 0.5kb downstream 3238 true scaffold_6: 2089280-2092517 Citrus clementina
Ciclev10013900m.g 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 2089280-2089779 Citrus clementina
Ciclev10013900m.g 1.0kb upstream 1.0kb upstream 3738 true scaffold_6: 2089780-2093517 Citrus clementina
Ciclev10013900m.g 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 2092518-2093517 Citrus clementina
Ciclev10013900m.g 1.0kb downstream 1.0kb downstream 3738 true scaffold_6: 2088780-2092517 Citrus clementina
Ciclev10013900m.g 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 2088780-2089779 Citrus clementina
Ciclev10013900m.g 2.0kb upstream 2.0kb upstream 4738 true scaffold_6: 2089780-2094517 Citrus clementina
Ciclev10013900m.g 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 2092518-2094517 Citrus clementina
Ciclev10013900m.g 2.0kb downstream 2.0kb downstream 4738 true scaffold_6: 2087780-2092517 Citrus clementina
Ciclev10013900m.g 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 2087780-2089779 Citrus clementina
Ciclev10013900m.g 5.0kb upstream 5.0kb upstream 7738 true scaffold_6: 2089780-2097517 Citrus clementina
Ciclev10013900m.g 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 2092518-2097517 Citrus clementina
Ciclev10013900m.g 5.0kb downstream 5.0kb downstream 7738 true scaffold_6: 2084780-2092517 Citrus clementina
Ciclev10013900m.g 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 2084780-2089779 Citrus clementina
Ciclev10013900m.g 10.0kb upstream 10.0kb upstream 12738 true scaffold_6: 2089780-2102517 Citrus clementina
Ciclev10013900m.g 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 2092518-2102517 Citrus clementina
Ciclev10013900m.g 10.0kb downstream 10.0kb downstream 12738 true scaffold_6: 2079780-2092517 Citrus clementina
Ciclev10013900m.g 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 2079780-2089779 Citrus clementina

8 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121526728 5273 Angiosperm Singleton cluster - no MSA
124325977 5266 SBM Singleton cluster - no MSA
124171406 5268 Malvidae Singleton cluster - no MSA
123894056 5270 Rosid Singleton cluster - no MSA
123475973 5271 Pentapetalae Singleton cluster - no MSA
122511227 5272 Eudicot Singleton cluster - no MSA
120799490 5274 Embryophyte Singleton cluster - no MSA
122841044 5275 Viridiplantae Singleton cluster - no MSA

0 Rna Seq Expressions

0 Strain