Gene : Ciclev10010079m.g C. clementina v1.0
Defline:  (1 of 9) PF05627 - Cleavage site for pathogenic type III effector avirulence factor Avr (AvrRpt-cleavage) Genomic Order:  1715
Name:  ? Ciclev10010079m.g Secondary Identifier:  ? PAC:20794361
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Ciclev10010079m.g 0.5kb upstream 0.5kb upstream 3431 true scaffold_1: 23553625-23557055 Citrus clementina
Ciclev10010079m.g 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 23553625-23554124 Citrus clementina
Ciclev10010079m.g 0.5kb downstream 0.5kb downstream 3431 true scaffold_1: 23554125-23557555 Citrus clementina
Ciclev10010079m.g 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 23557056-23557555 Citrus clementina
Ciclev10010079m.g 1.0kb upstream 1.0kb upstream 3931 true scaffold_1: 23553125-23557055 Citrus clementina
Ciclev10010079m.g 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 23553125-23554124 Citrus clementina
Ciclev10010079m.g 1.0kb downstream 1.0kb downstream 3931 true scaffold_1: 23554125-23558055 Citrus clementina
Ciclev10010079m.g 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 23557056-23558055 Citrus clementina
Ciclev10010079m.g 2.0kb upstream 2.0kb upstream 4931 true scaffold_1: 23552125-23557055 Citrus clementina
Ciclev10010079m.g 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 23552125-23554124 Citrus clementina
Ciclev10010079m.g 2.0kb downstream 2.0kb downstream 4931 true scaffold_1: 23554125-23559055 Citrus clementina
Ciclev10010079m.g 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 23557056-23559055 Citrus clementina
Ciclev10010079m.g 5.0kb upstream 5.0kb upstream 7931 true scaffold_1: 23549125-23557055 Citrus clementina
Ciclev10010079m.g 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 23549125-23554124 Citrus clementina
Ciclev10010079m.g 5.0kb downstream 5.0kb downstream 7931 true scaffold_1: 23554125-23562055 Citrus clementina
Ciclev10010079m.g 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 23557056-23562055 Citrus clementina
Ciclev10010079m.g 10.0kb upstream 10.0kb upstream 12931 true scaffold_1: 23544125-23557055 Citrus clementina
Ciclev10010079m.g 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 23544125-23554124 Citrus clementina
Ciclev10010079m.g 10.0kb downstream 10.0kb downstream 12931 true scaffold_1: 23554125-23567055 Citrus clementina
Ciclev10010079m.g 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 23557056-23567055 Citrus clementina

8 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124345918 5266 SBM View MSA
124248769 5268 Malvidae View MSA
124074284 5270 Rosid View MSA
123751462 5271 Pentapetalae View MSA
122795351 5272 Eudicot View MSA
122048962 5273 Angiosperm View MSA
121311190 5274 Embryophyte View MSA
123348519 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain