Gene : Ciclev10033368m.g C. clementina v1.0
Defline:  (1 of 2) PF00432//PF13249 - Prenyltransferase and squalene oxidase repeat (Prenyltrans) // Squalene-hopene cyclase N-terminal domain (SQHop_cyclase_N) Genomic Order:  605
Name:  ? Ciclev10033368m.g Secondary Identifier:  ? PAC:20804871
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cclementina PWY-5203 Citrus clementina pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Ciclev10033368m.g 0.5kb upstream 0.5kb upstream 10050 true scaffold_4: 5455449-5465498 Citrus clementina
Ciclev10033368m.g 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 5455449-5455948 Citrus clementina
Ciclev10033368m.g 0.5kb downstream 0.5kb downstream 10050 true scaffold_4: 5455949-5465998 Citrus clementina
Ciclev10033368m.g 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 5465499-5465998 Citrus clementina
Ciclev10033368m.g 1.0kb upstream 1.0kb upstream 10550 true scaffold_4: 5454949-5465498 Citrus clementina
Ciclev10033368m.g 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 5454949-5455948 Citrus clementina
Ciclev10033368m.g 1.0kb downstream 1.0kb downstream 10550 true scaffold_4: 5455949-5466498 Citrus clementina
Ciclev10033368m.g 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 5465499-5466498 Citrus clementina
Ciclev10033368m.g 2.0kb upstream 2.0kb upstream 11550 true scaffold_4: 5453949-5465498 Citrus clementina
Ciclev10033368m.g 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 5453949-5455948 Citrus clementina
Ciclev10033368m.g 2.0kb downstream 2.0kb downstream 11550 true scaffold_4: 5455949-5467498 Citrus clementina
Ciclev10033368m.g 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 5465499-5467498 Citrus clementina
Ciclev10033368m.g 5.0kb upstream 5.0kb upstream 14550 true scaffold_4: 5450949-5465498 Citrus clementina
Ciclev10033368m.g 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 5450949-5455948 Citrus clementina
Ciclev10033368m.g 5.0kb downstream 5.0kb downstream 14550 true scaffold_4: 5455949-5470498 Citrus clementina
Ciclev10033368m.g 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 5465499-5470498 Citrus clementina
Ciclev10033368m.g 10.0kb upstream 10.0kb upstream 19550 true scaffold_4: 5445949-5465498 Citrus clementina
Ciclev10033368m.g 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 5445949-5455948 Citrus clementina
Ciclev10033368m.g 10.0kb downstream 10.0kb downstream 19550 true scaffold_4: 5455949-5475498 Citrus clementina
Ciclev10033368m.g 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 5465499-5475498 Citrus clementina

8 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122028235 5273 Angiosperm View MSA
124351667 5266 SBM View MSA
124245550 5268 Malvidae View MSA
124052067 5270 Rosid View MSA
123750414 5271 Pentapetalae View MSA
122773643 5272 Eudicot View MSA
121297756 5274 Embryophyte View MSA
123335781 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain