Gene : Ciclev10004730m.g C. clementina v1.0
Defline:  (1 of 1) PTHR13789:SF249 - LYCOPENE BETA CYCLASE, CHLOROPLASTIC Genomic Order:  1529
Name:  ? Ciclev10004730m.g Secondary Identifier:  ? PAC:20792481
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cclementina CAROTENOID-PWY Citrus clementina pathologic  
Cclementina PWY-5943 Citrus clementina pathologic  
Cclementina PWY-5947 Citrus clementina pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Ciclev10004730m.g 0.5kb upstream 0.5kb upstream 2277 true scaffold_9: 22727810-22730086 Citrus clementina
Ciclev10004730m.g 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 22727810-22728309 Citrus clementina
Ciclev10004730m.g 0.5kb downstream 0.5kb downstream 2277 true scaffold_9: 22728310-22730586 Citrus clementina
Ciclev10004730m.g 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 22730087-22730586 Citrus clementina
Ciclev10004730m.g 1.0kb upstream 1.0kb upstream 2777 true scaffold_9: 22727310-22730086 Citrus clementina
Ciclev10004730m.g 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 22727310-22728309 Citrus clementina
Ciclev10004730m.g 1.0kb downstream 1.0kb downstream 2777 true scaffold_9: 22728310-22731086 Citrus clementina
Ciclev10004730m.g 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 22730087-22731086 Citrus clementina
Ciclev10004730m.g 2.0kb upstream 2.0kb upstream 3777 true scaffold_9: 22726310-22730086 Citrus clementina
Ciclev10004730m.g 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 22726310-22728309 Citrus clementina
Ciclev10004730m.g 2.0kb downstream 2.0kb downstream 3777 true scaffold_9: 22728310-22732086 Citrus clementina
Ciclev10004730m.g 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 22730087-22732086 Citrus clementina
Ciclev10004730m.g 5.0kb upstream 5.0kb upstream 6777 true scaffold_9: 22723310-22730086 Citrus clementina
Ciclev10004730m.g 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 22723310-22728309 Citrus clementina
Ciclev10004730m.g 5.0kb downstream 5.0kb downstream 6777 true scaffold_9: 22728310-22735086 Citrus clementina
Ciclev10004730m.g 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 22730087-22735086 Citrus clementina
Ciclev10004730m.g 10.0kb upstream 10.0kb upstream 11777 true scaffold_9: 22718310-22730086 Citrus clementina
Ciclev10004730m.g 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 22718310-22728309 Citrus clementina
Ciclev10004730m.g 10.0kb downstream 10.0kb downstream 11777 true scaffold_9: 22728310-22740086 Citrus clementina
Ciclev10004730m.g 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 22730087-22740086 Citrus clementina

8 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124345045 5266 SBM View MSA
124240984 5268 Malvidae View MSA
124065821 5270 Rosid View MSA
123737595 5271 Pentapetalae View MSA
122786885 5272 Eudicot View MSA
122046204 5273 Angiosperm View MSA
121345644 5274 Embryophyte View MSA
123423874 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain