Gene : Lus10001938.g L. usitatissimum v1.0
Defline:  (1 of 2) PTHR11879:SF1 - ASPARTATE AMINOTRANSFERASE, CHLOROPLASTIC Genomic Order:  1
Name:  ? Lus10001938.g Secondary Identifier:  ? PAC:23182270
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Sequence Feature Displayer

Ontology Annotation Displayer

6 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Lusitatissimum ASPARTATE-DEG1-PWY Linum usitatissimum pathologic  
Lusitatissimum ASPARTATESYN-PWY Linum usitatissimum pathologic  
Lusitatissimum PWY-3001 Linum usitatissimum pathologic  
Lusitatissimum PWY-7115 Linum usitatissimum pathologic  
Lusitatissimum PWY-7117 Linum usitatissimum pathologic  
Lusitatissimum THRESYN-PWY Linum usitatissimum pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lus10001938.g 0.5kb upstream 0.5kb upstream 3456 true scaffold1801: 10518-13973 Linum usitatissimum
Lus10001938.g 0.5kb upstream 0.5kb upstream 500 false scaffold1801: 10518-11017 Linum usitatissimum
Lus10001938.g 0.5kb downstream 0.5kb downstream 3456 true scaffold1801: 11018-14473 Linum usitatissimum
Lus10001938.g 0.5kb downstream 0.5kb downstream 500 false scaffold1801: 13974-14473 Linum usitatissimum
Lus10001938.g 1.0kb upstream 1.0kb upstream 3956 true scaffold1801: 10018-13973 Linum usitatissimum
Lus10001938.g 1.0kb upstream 1.0kb upstream 1000 false scaffold1801: 10018-11017 Linum usitatissimum
Lus10001938.g 1.0kb downstream 1.0kb downstream 3956 true scaffold1801: 11018-14973 Linum usitatissimum
Lus10001938.g 1.0kb downstream 1.0kb downstream 1000 false scaffold1801: 13974-14973 Linum usitatissimum
Lus10001938.g 2.0kb upstream 2.0kb upstream 4956 true scaffold1801: 9018-13973 Linum usitatissimum
Lus10001938.g 2.0kb upstream 2.0kb upstream 2000 false scaffold1801: 9018-11017 Linum usitatissimum
Lus10001938.g 2.0kb downstream 2.0kb downstream 4956 true scaffold1801: 11018-15973 Linum usitatissimum
Lus10001938.g 2.0kb downstream 2.0kb downstream 2000 false scaffold1801: 13974-15973 Linum usitatissimum
Lus10001938.g 5.0kb upstream 5.0kb upstream 7956 true scaffold1801: 6018-13973 Linum usitatissimum
Lus10001938.g 5.0kb upstream 5.0kb upstream 5000 false scaffold1801: 6018-11017 Linum usitatissimum
Lus10001938.g 5.0kb downstream 5.0kb downstream 7956 true scaffold1801: 11018-18973 Linum usitatissimum
Lus10001938.g 5.0kb downstream 5.0kb downstream 5000 false scaffold1801: 13974-18973 Linum usitatissimum
Lus10001938.g 10.0kb upstream 10.0kb upstream 12956 true scaffold1801: 1018-13973 Linum usitatissimum
Lus10001938.g 10.0kb upstream 10.0kb upstream 10000 false scaffold1801: 1018-11017 Linum usitatissimum
Lus10001938.g 10.0kb downstream 10.0kb downstream 12956 true scaffold1801: 11018-23973 Linum usitatissimum
Lus10001938.g 10.0kb downstream 10.0kb downstream 10000 false scaffold1801: 13974-23973 Linum usitatissimum

8 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122457311 5262 Malpighiales View MSA
124241276 5268 Malvidae View MSA
124066749 5270 Rosid View MSA
123740507 5271 Pentapetalae View MSA
122797537 5272 Eudicot View MSA
122048100 5273 Angiosperm View MSA
121346908 5274 Embryophyte View MSA
123424622 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain