Gene : Lus10006361.g L. usitatissimum v1.0
Defline:  (1 of 15) PF05627 - Cleavage site for pathogenic type III effector avirulence factor Avr (AvrRpt-cleavage) Genomic Order:  8
Name:  ? Lus10006361.g Secondary Identifier:  ? PAC:23162631
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lus10006361.g 0.5kb upstream 0.5kb upstream 1069 true scaffold1603: 22522-23590 Linum usitatissimum
Lus10006361.g 0.5kb upstream 0.5kb upstream 500 false scaffold1603: 23091-23590 Linum usitatissimum
Lus10006361.g 0.5kb downstream 0.5kb downstream 1069 true scaffold1603: 22022-23090 Linum usitatissimum
Lus10006361.g 0.5kb downstream 0.5kb downstream 500 false scaffold1603: 22022-22521 Linum usitatissimum
Lus10006361.g 1.0kb upstream 1.0kb upstream 1569 true scaffold1603: 22522-24090 Linum usitatissimum
Lus10006361.g 1.0kb upstream 1.0kb upstream 1000 false scaffold1603: 23091-24090 Linum usitatissimum
Lus10006361.g 1.0kb downstream 1.0kb downstream 1569 true scaffold1603: 21522-23090 Linum usitatissimum
Lus10006361.g 1.0kb downstream 1.0kb downstream 1000 false scaffold1603: 21522-22521 Linum usitatissimum
Lus10006361.g 2.0kb upstream 2.0kb upstream 2569 true scaffold1603: 22522-25090 Linum usitatissimum
Lus10006361.g 2.0kb upstream 2.0kb upstream 2000 false scaffold1603: 23091-25090 Linum usitatissimum
Lus10006361.g 2.0kb downstream 2.0kb downstream 2569 true scaffold1603: 20522-23090 Linum usitatissimum
Lus10006361.g 2.0kb downstream 2.0kb downstream 2000 false scaffold1603: 20522-22521 Linum usitatissimum
Lus10006361.g 5.0kb upstream 5.0kb upstream 5569 true scaffold1603: 22522-28090 Linum usitatissimum
Lus10006361.g 5.0kb upstream 5.0kb upstream 5000 false scaffold1603: 23091-28090 Linum usitatissimum
Lus10006361.g 5.0kb downstream 5.0kb downstream 5569 true scaffold1603: 17522-23090 Linum usitatissimum
Lus10006361.g 5.0kb downstream 5.0kb downstream 5000 false scaffold1603: 17522-22521 Linum usitatissimum
Lus10006361.g 10.0kb upstream 10.0kb upstream 10569 true scaffold1603: 22522-33090 Linum usitatissimum
Lus10006361.g 10.0kb upstream 10.0kb upstream 10000 false scaffold1603: 23091-33090 Linum usitatissimum
Lus10006361.g 10.0kb downstream 10.0kb downstream 10569 true scaffold1603: 12522-23090 Linum usitatissimum
Lus10006361.g 10.0kb downstream 10.0kb downstream 10000 false scaffold1603: 12522-22521 Linum usitatissimum

8 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122448778 5262 Malpighiales View MSA
124248769 5268 Malvidae View MSA
124074284 5270 Rosid View MSA
123751462 5271 Pentapetalae View MSA
122795351 5272 Eudicot View MSA
122048962 5273 Angiosperm View MSA
121311190 5274 Embryophyte View MSA
123348519 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain