Gene : Lus10043157.g L. usitatissimum v1.0
Defline:  (1 of 3) PTHR11680//PTHR11680:SF11 - SERINE HYDROXYMETHYLTRANSFERASE Genomic Order:  223
Name:  ? Lus10043157.g Secondary Identifier:  ? PAC:23168210
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Sequence Feature Displayer

Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Lusitatissimum GLYSYN-PWY Linum usitatissimum pathologic  
Lusitatissimum PWY-2161 Linum usitatissimum pathologic  
Lusitatissimum PWY-3841 Linum usitatissimum pathologic  
Lusitatissimum SER-GLYSYN-PWY Linum usitatissimum pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lus10043157.g 0.5kb upstream 0.5kb upstream 2568 true scaffold25: 1491338-1493905 Linum usitatissimum
Lus10043157.g 0.5kb upstream 0.5kb upstream 500 false scaffold25: 1491338-1491837 Linum usitatissimum
Lus10043157.g 0.5kb downstream 0.5kb downstream 2568 true scaffold25: 1491838-1494405 Linum usitatissimum
Lus10043157.g 0.5kb downstream 0.5kb downstream 500 false scaffold25: 1493906-1494405 Linum usitatissimum
Lus10043157.g 1.0kb upstream 1.0kb upstream 3068 true scaffold25: 1490838-1493905 Linum usitatissimum
Lus10043157.g 1.0kb upstream 1.0kb upstream 1000 false scaffold25: 1490838-1491837 Linum usitatissimum
Lus10043157.g 1.0kb downstream 1.0kb downstream 3068 true scaffold25: 1491838-1494905 Linum usitatissimum
Lus10043157.g 1.0kb downstream 1.0kb downstream 1000 false scaffold25: 1493906-1494905 Linum usitatissimum
Lus10043157.g 2.0kb upstream 2.0kb upstream 4068 true scaffold25: 1489838-1493905 Linum usitatissimum
Lus10043157.g 2.0kb upstream 2.0kb upstream 2000 false scaffold25: 1489838-1491837 Linum usitatissimum
Lus10043157.g 2.0kb downstream 2.0kb downstream 4068 true scaffold25: 1491838-1495905 Linum usitatissimum
Lus10043157.g 2.0kb downstream 2.0kb downstream 2000 false scaffold25: 1493906-1495905 Linum usitatissimum
Lus10043157.g 5.0kb upstream 5.0kb upstream 7068 true scaffold25: 1486838-1493905 Linum usitatissimum
Lus10043157.g 5.0kb upstream 5.0kb upstream 5000 false scaffold25: 1486838-1491837 Linum usitatissimum
Lus10043157.g 5.0kb downstream 5.0kb downstream 7068 true scaffold25: 1491838-1498905 Linum usitatissimum
Lus10043157.g 5.0kb downstream 5.0kb downstream 5000 false scaffold25: 1493906-1498905 Linum usitatissimum
Lus10043157.g 10.0kb upstream 10.0kb upstream 12068 true scaffold25: 1481838-1493905 Linum usitatissimum
Lus10043157.g 10.0kb upstream 10.0kb upstream 10000 false scaffold25: 1481838-1491837 Linum usitatissimum
Lus10043157.g 10.0kb downstream 10.0kb downstream 12068 true scaffold25: 1491838-1503905 Linum usitatissimum
Lus10043157.g 10.0kb downstream 10.0kb downstream 10000 false scaffold25: 1493906-1503905 Linum usitatissimum

8 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122418049 5262 Malpighiales Singleton cluster - no MSA
124210690 5268 Malvidae Singleton cluster - no MSA
124067933 5270 Rosid View MSA
123746459 5271 Pentapetalae View MSA
122786293 5272 Eudicot View MSA
122042145 5273 Angiosperm View MSA
121347378 5274 Embryophyte View MSA
123426459 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain