Gene : Lus10012316.g L. usitatissimum v1.0
Defline:  (1 of 15) PF05627 - Cleavage site for pathogenic type III effector avirulence factor Avr (AvrRpt-cleavage) Genomic Order:  21
Name:  ? Lus10012316.g Secondary Identifier:  ? PAC:23176794
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lus10012316.g 0.5kb upstream 0.5kb upstream 1103 true scaffold572: 97467-98569 Linum usitatissimum
Lus10012316.g 0.5kb upstream 0.5kb upstream 500 false scaffold572: 98070-98569 Linum usitatissimum
Lus10012316.g 0.5kb downstream 0.5kb downstream 1103 true scaffold572: 96967-98069 Linum usitatissimum
Lus10012316.g 0.5kb downstream 0.5kb downstream 500 false scaffold572: 96967-97466 Linum usitatissimum
Lus10012316.g 1.0kb upstream 1.0kb upstream 1603 true scaffold572: 97467-99069 Linum usitatissimum
Lus10012316.g 1.0kb upstream 1.0kb upstream 1000 false scaffold572: 98070-99069 Linum usitatissimum
Lus10012316.g 1.0kb downstream 1.0kb downstream 1603 true scaffold572: 96467-98069 Linum usitatissimum
Lus10012316.g 1.0kb downstream 1.0kb downstream 1000 false scaffold572: 96467-97466 Linum usitatissimum
Lus10012316.g 2.0kb upstream 2.0kb upstream 2603 true scaffold572: 97467-100069 Linum usitatissimum
Lus10012316.g 2.0kb upstream 2.0kb upstream 2000 false scaffold572: 98070-100069 Linum usitatissimum
Lus10012316.g 2.0kb downstream 2.0kb downstream 2603 true scaffold572: 95467-98069 Linum usitatissimum
Lus10012316.g 2.0kb downstream 2.0kb downstream 2000 false scaffold572: 95467-97466 Linum usitatissimum
Lus10012316.g 5.0kb upstream 5.0kb upstream 5603 true scaffold572: 97467-103069 Linum usitatissimum
Lus10012316.g 5.0kb upstream 5.0kb upstream 5000 false scaffold572: 98070-103069 Linum usitatissimum
Lus10012316.g 5.0kb downstream 5.0kb downstream 5603 true scaffold572: 92467-98069 Linum usitatissimum
Lus10012316.g 5.0kb downstream 5.0kb downstream 5000 false scaffold572: 92467-97466 Linum usitatissimum
Lus10012316.g 10.0kb upstream 10.0kb upstream 10603 true scaffold572: 97467-108069 Linum usitatissimum
Lus10012316.g 10.0kb upstream 10.0kb upstream 10000 false scaffold572: 98070-108069 Linum usitatissimum
Lus10012316.g 10.0kb downstream 10.0kb downstream 10603 true scaffold572: 87467-98069 Linum usitatissimum
Lus10012316.g 10.0kb downstream 10.0kb downstream 10000 false scaffold572: 87467-97466 Linum usitatissimum

8 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122448778 5262 Malpighiales View MSA
124248769 5268 Malvidae View MSA
124074284 5270 Rosid View MSA
123751462 5271 Pentapetalae View MSA
122795351 5272 Eudicot View MSA
122048962 5273 Angiosperm View MSA
121311190 5274 Embryophyte View MSA
123348519 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain