Gene : Lus10042524.g L. usitatissimum v1.0
Defline:  (1 of 2) PTHR33970:SF1 - VIOLAXANTHIN DE-EPOXIDASE, CHLOROPLASTIC Genomic Order:  13
Name:  ? Lus10042524.g Secondary Identifier:  ? PAC:23181830
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Lusitatissimum CAROTENOID-PWY Linum usitatissimum pathologic  
Lusitatissimum PWY-5945 Linum usitatissimum pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lus10042524.g 0.5kb upstream 0.5kb upstream 2246 true scaffold67: 130388-132633 Linum usitatissimum
Lus10042524.g 0.5kb upstream 0.5kb upstream 500 false scaffold67: 130388-130887 Linum usitatissimum
Lus10042524.g 0.5kb downstream 0.5kb downstream 2246 true scaffold67: 130888-133133 Linum usitatissimum
Lus10042524.g 0.5kb downstream 0.5kb downstream 500 false scaffold67: 132634-133133 Linum usitatissimum
Lus10042524.g 1.0kb upstream 1.0kb upstream 2746 true scaffold67: 129888-132633 Linum usitatissimum
Lus10042524.g 1.0kb upstream 1.0kb upstream 1000 false scaffold67: 129888-130887 Linum usitatissimum
Lus10042524.g 1.0kb downstream 1.0kb downstream 2746 true scaffold67: 130888-133633 Linum usitatissimum
Lus10042524.g 1.0kb downstream 1.0kb downstream 1000 false scaffold67: 132634-133633 Linum usitatissimum
Lus10042524.g 2.0kb upstream 2.0kb upstream 3746 true scaffold67: 128888-132633 Linum usitatissimum
Lus10042524.g 2.0kb upstream 2.0kb upstream 2000 false scaffold67: 128888-130887 Linum usitatissimum
Lus10042524.g 2.0kb downstream 2.0kb downstream 3746 true scaffold67: 130888-134633 Linum usitatissimum
Lus10042524.g 2.0kb downstream 2.0kb downstream 2000 false scaffold67: 132634-134633 Linum usitatissimum
Lus10042524.g 5.0kb upstream 5.0kb upstream 6746 true scaffold67: 125888-132633 Linum usitatissimum
Lus10042524.g 5.0kb upstream 5.0kb upstream 5000 false scaffold67: 125888-130887 Linum usitatissimum
Lus10042524.g 5.0kb downstream 5.0kb downstream 6746 true scaffold67: 130888-137633 Linum usitatissimum
Lus10042524.g 5.0kb downstream 5.0kb downstream 5000 false scaffold67: 132634-137633 Linum usitatissimum
Lus10042524.g 10.0kb upstream 10.0kb upstream 11746 true scaffold67: 120888-132633 Linum usitatissimum
Lus10042524.g 10.0kb upstream 10.0kb upstream 10000 false scaffold67: 120888-130887 Linum usitatissimum
Lus10042524.g 10.0kb downstream 10.0kb downstream 11746 true scaffold67: 130888-142633 Linum usitatissimum
Lus10042524.g 10.0kb downstream 10.0kb downstream 10000 false scaffold67: 132634-142633 Linum usitatissimum

8 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122461380 5262 Malpighiales View MSA
124238340 5268 Malvidae View MSA
124063145 5270 Rosid View MSA
123739304 5271 Pentapetalae View MSA
122790516 5272 Eudicot View MSA
122041813 5273 Angiosperm View MSA
121344367 5274 Embryophyte View MSA
123425421 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain