Gene : Potri.001G253300 P. trichocarpa v3.0
Defline:  (1 of 1) K00830 - alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase (AGXT) Genomic Order:  2533
Name:  ? Potri.001G253300 Secondary Identifier:  ? PAC:27048148
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ptrichocarpa GLYSYN-ALA-PWY Populus trichocarpa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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4 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Potri.001G253300 0.5kb upstream 0.5kb upstream 6095 true Chr01: 26300962-26307056 Populus trichocarpa
Potri.001G253300 0.5kb upstream 0.5kb upstream 500 false Chr01: 26306557-26307056 Populus trichocarpa
Potri.001G253300 0.5kb downstream 0.5kb downstream 6095 true Chr01: 26300462-26306556 Populus trichocarpa
Potri.001G253300 0.5kb downstream 0.5kb downstream 500 false Chr01: 26300462-26300961 Populus trichocarpa
Potri.001G253300 1.0kb upstream 1.0kb upstream 6595 true Chr01: 26300962-26307556 Populus trichocarpa
Potri.001G253300 1.0kb upstream 1.0kb upstream 1000 false Chr01: 26306557-26307556 Populus trichocarpa
Potri.001G253300 1.0kb downstream 1.0kb downstream 6595 true Chr01: 26299962-26306556 Populus trichocarpa
Potri.001G253300 1.0kb downstream 1.0kb downstream 1000 false Chr01: 26299962-26300961 Populus trichocarpa
Potri.001G253300 2.0kb upstream 2.0kb upstream 7595 true Chr01: 26300962-26308556 Populus trichocarpa
Potri.001G253300 2.0kb upstream 2.0kb upstream 2000 false Chr01: 26306557-26308556 Populus trichocarpa
Potri.001G253300 2.0kb downstream 2.0kb downstream 7595 true Chr01: 26298962-26306556 Populus trichocarpa
Potri.001G253300 2.0kb downstream 2.0kb downstream 2000 false Chr01: 26298962-26300961 Populus trichocarpa
Potri.001G253300 5.0kb upstream 5.0kb upstream 10595 true Chr01: 26300962-26311556 Populus trichocarpa
Potri.001G253300 5.0kb upstream 5.0kb upstream 5000 false Chr01: 26306557-26311556 Populus trichocarpa
Potri.001G253300 5.0kb downstream 5.0kb downstream 10595 true Chr01: 26295962-26306556 Populus trichocarpa
Potri.001G253300 5.0kb downstream 5.0kb downstream 5000 false Chr01: 26295962-26300961 Populus trichocarpa
Potri.001G253300 10.0kb upstream 10.0kb upstream 15595 true Chr01: 26300962-26316556 Populus trichocarpa
Potri.001G253300 10.0kb upstream 10.0kb upstream 10000 false Chr01: 26306557-26316556 Populus trichocarpa
Potri.001G253300 10.0kb downstream 10.0kb downstream 15595 true Chr01: 26290962-26306556 Populus trichocarpa
Potri.001G253300 10.0kb downstream 10.0kb downstream 10000 false Chr01: 26290962-26300961 Populus trichocarpa

0 Protein Family

40 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.081        
cufflinks 11.849     High High
cufflinks 17.311     High High
cufflinks 0.371       Low
cufflinks 2.112        
cufflinks 1.796        
cufflinks 0.446       Low
cufflinks 0.842        
cufflinks 3.385        
cufflinks 0.613        
cufflinks 8.521       High
cufflinks 0.223       Low
cufflinks 0.394       Low
cufflinks 12.12     High High
cufflinks 1.659        
cufflinks 1.278        
cufflinks 0.458       Low
cufflinks 12.116     High High
cufflinks 0.74        
cufflinks 2.189        
cufflinks 4.092        
cufflinks 1.086        
cufflinks 2.975        
cufflinks 2.52        
cufflinks 131.002     High  
cufflinks 122.607     High  
cufflinks 95.767     High  
cufflinks 124.989     High  
cufflinks 75.97     High  
cufflinks 108.311     High  

0 Strain