Gene : Potri.001G230500 P. trichocarpa v3.0
Defline:  (1 of 3) 2.3.3.1//2.3.3.16 - Citrate (Si)-synthase / Citrate oxaloacetate-lyase ((pro-3S)-CH(2)COO->acetyl-CoA) // Citrate synthase (unknown stereospecificity) / Oxaloacetate transacetase Genomic Order:  2305
Name:  ? Potri.001G230500 Secondary Identifier:  ? PAC:27045510
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Sequence Feature Displayer

Ontology Annotation Displayer

5 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ptrichocarpa PWY-561 Populus trichocarpa pathologic  
Ptrichocarpa PWY-5464 Populus trichocarpa pathologic  
Ptrichocarpa PWY-5690 Populus trichocarpa pathologic  
Ptrichocarpa GLYOXYLATE-BYPASS Populus trichocarpa pathologic  
Ptrichocarpa PWY-6549 Populus trichocarpa pathologic  

Genomics

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Expression

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4 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Potri.001G230500 0.5kb upstream 0.5kb upstream 6955 true Chr01: 24229840-24236794 Populus trichocarpa
Potri.001G230500 0.5kb upstream 0.5kb upstream 500 false Chr01: 24236295-24236794 Populus trichocarpa
Potri.001G230500 0.5kb downstream 0.5kb downstream 6955 true Chr01: 24229340-24236294 Populus trichocarpa
Potri.001G230500 0.5kb downstream 0.5kb downstream 500 false Chr01: 24229340-24229839 Populus trichocarpa
Potri.001G230500 1.0kb upstream 1.0kb upstream 7455 true Chr01: 24229840-24237294 Populus trichocarpa
Potri.001G230500 1.0kb upstream 1.0kb upstream 1000 false Chr01: 24236295-24237294 Populus trichocarpa
Potri.001G230500 1.0kb downstream 1.0kb downstream 7455 true Chr01: 24228840-24236294 Populus trichocarpa
Potri.001G230500 1.0kb downstream 1.0kb downstream 1000 false Chr01: 24228840-24229839 Populus trichocarpa
Potri.001G230500 2.0kb upstream 2.0kb upstream 8455 true Chr01: 24229840-24238294 Populus trichocarpa
Potri.001G230500 2.0kb upstream 2.0kb upstream 2000 false Chr01: 24236295-24238294 Populus trichocarpa
Potri.001G230500 2.0kb downstream 2.0kb downstream 8455 true Chr01: 24227840-24236294 Populus trichocarpa
Potri.001G230500 2.0kb downstream 2.0kb downstream 2000 false Chr01: 24227840-24229839 Populus trichocarpa
Potri.001G230500 5.0kb upstream 5.0kb upstream 11455 true Chr01: 24229840-24241294 Populus trichocarpa
Potri.001G230500 5.0kb upstream 5.0kb upstream 5000 false Chr01: 24236295-24241294 Populus trichocarpa
Potri.001G230500 5.0kb downstream 5.0kb downstream 11455 true Chr01: 24224840-24236294 Populus trichocarpa
Potri.001G230500 5.0kb downstream 5.0kb downstream 5000 false Chr01: 24224840-24229839 Populus trichocarpa
Potri.001G230500 10.0kb upstream 10.0kb upstream 16455 true Chr01: 24229840-24246294 Populus trichocarpa
Potri.001G230500 10.0kb upstream 10.0kb upstream 10000 false Chr01: 24236295-24246294 Populus trichocarpa
Potri.001G230500 10.0kb downstream 10.0kb downstream 16455 true Chr01: 24219840-24236294 Populus trichocarpa
Potri.001G230500 10.0kb downstream 10.0kb downstream 10000 false Chr01: 24219840-24229839 Populus trichocarpa

0 Protein Family

40 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.47       High
cufflinks 2.303        
cufflinks 2.165       Low
cufflinks 2.923        
cufflinks 1.907       Low
cufflinks 2.662        
cufflinks 5.811       High
cufflinks 1.935       Low
cufflinks 3.496        
cufflinks 4.047        
cufflinks 2.717        
cufflinks 3.071        
cufflinks 6.005       High
cufflinks 2.332        
cufflinks 2.492        
cufflinks 2.488        
cufflinks 2.988        
cufflinks 2.591        
cufflinks 2.855        
cufflinks 2.82        
cufflinks 5.404       High
cufflinks 3.277        
cufflinks 3.065        
cufflinks 3.483        
cufflinks 40.039     High  
cufflinks 21.458       Low
cufflinks 20.714       Low
cufflinks 36.965     High  
cufflinks 40.359     High  
cufflinks 25.817        

0 Strain