Gene : Potri.001G289000 P. trichocarpa v3.0
Defline:  (1 of 4) 6.1.1.12 - Aspartate--tRNA ligase / Aspartyl-tRNA synthetase Genomic Order:  2890
Name:  ? Potri.001G289000 Secondary Identifier:  ? PAC:27042736
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ptrichocarpa TRNA-CHARGING-PWY Populus trichocarpa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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3 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Potri.001G289000 0.5kb upstream 0.5kb upstream 6601 true Chr01: 29440351-29446951 Populus trichocarpa
Potri.001G289000 0.5kb upstream 0.5kb upstream 500 false Chr01: 29446452-29446951 Populus trichocarpa
Potri.001G289000 0.5kb downstream 0.5kb downstream 6601 true Chr01: 29439851-29446451 Populus trichocarpa
Potri.001G289000 0.5kb downstream 0.5kb downstream 500 false Chr01: 29439851-29440350 Populus trichocarpa
Potri.001G289000 1.0kb upstream 1.0kb upstream 7101 true Chr01: 29440351-29447451 Populus trichocarpa
Potri.001G289000 1.0kb upstream 1.0kb upstream 1000 false Chr01: 29446452-29447451 Populus trichocarpa
Potri.001G289000 1.0kb downstream 1.0kb downstream 7101 true Chr01: 29439351-29446451 Populus trichocarpa
Potri.001G289000 1.0kb downstream 1.0kb downstream 1000 false Chr01: 29439351-29440350 Populus trichocarpa
Potri.001G289000 2.0kb upstream 2.0kb upstream 8101 true Chr01: 29440351-29448451 Populus trichocarpa
Potri.001G289000 2.0kb upstream 2.0kb upstream 2000 false Chr01: 29446452-29448451 Populus trichocarpa
Potri.001G289000 2.0kb downstream 2.0kb downstream 8101 true Chr01: 29438351-29446451 Populus trichocarpa
Potri.001G289000 2.0kb downstream 2.0kb downstream 2000 false Chr01: 29438351-29440350 Populus trichocarpa
Potri.001G289000 5.0kb upstream 5.0kb upstream 11101 true Chr01: 29440351-29451451 Populus trichocarpa
Potri.001G289000 5.0kb upstream 5.0kb upstream 5000 false Chr01: 29446452-29451451 Populus trichocarpa
Potri.001G289000 5.0kb downstream 5.0kb downstream 11101 true Chr01: 29435351-29446451 Populus trichocarpa
Potri.001G289000 5.0kb downstream 5.0kb downstream 5000 false Chr01: 29435351-29440350 Populus trichocarpa
Potri.001G289000 10.0kb upstream 10.0kb upstream 16101 true Chr01: 29440351-29456451 Populus trichocarpa
Potri.001G289000 10.0kb upstream 10.0kb upstream 10000 false Chr01: 29446452-29456451 Populus trichocarpa
Potri.001G289000 10.0kb downstream 10.0kb downstream 16101 true Chr01: 29430351-29446451 Populus trichocarpa
Potri.001G289000 10.0kb downstream 10.0kb downstream 10000 false Chr01: 29430351-29440350 Populus trichocarpa

0 Protein Family

40 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.323        
cufflinks 0.315        
cufflinks 0.656        
cufflinks 0.042     Low Low
cufflinks 0.295        
cufflinks 0.899        
cufflinks 0.6        
cufflinks 0.263        
cufflinks 0.766        
cufflinks 0.151       Low
cufflinks 0.342        
cufflinks 0.525        
cufflinks 0.04     Low Low
cufflinks 0.817        
cufflinks 1.396       High
cufflinks 0.766        
cufflinks 1.792       High
cufflinks 0.209        
cufflinks 0.687        
cufflinks 0.657        
cufflinks 0.74        
cufflinks 0.874        
cufflinks 0.936        
cufflinks 0.366        
cufflinks 1.109        
cufflinks 1.559        
cufflinks 1.457        
cufflinks 2.489       High
cufflinks 1.971       High
cufflinks 1.268        

0 Strain