Gene : Potri.001G253700 P. trichocarpa v3.0
Defline:  (1 of 1) K08101 - phytochromobilin:ferredoxin oxidoreductase (E1.3.7.4) Genomic Order:  2537
Name:  ? Potri.001G253700 Secondary Identifier:  ? PAC:27042312
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ptrichocarpa PWY-7170 Populus trichocarpa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Potri.001G253700 0.5kb upstream 0.5kb upstream 5214 true Chr01: 26358195-26363408 Populus trichocarpa
Potri.001G253700 0.5kb upstream 0.5kb upstream 500 false Chr01: 26362909-26363408 Populus trichocarpa
Potri.001G253700 0.5kb downstream 0.5kb downstream 5214 true Chr01: 26357695-26362908 Populus trichocarpa
Potri.001G253700 0.5kb downstream 0.5kb downstream 500 false Chr01: 26357695-26358194 Populus trichocarpa
Potri.001G253700 1.0kb upstream 1.0kb upstream 5714 true Chr01: 26358195-26363908 Populus trichocarpa
Potri.001G253700 1.0kb upstream 1.0kb upstream 1000 false Chr01: 26362909-26363908 Populus trichocarpa
Potri.001G253700 1.0kb downstream 1.0kb downstream 5714 true Chr01: 26357195-26362908 Populus trichocarpa
Potri.001G253700 1.0kb downstream 1.0kb downstream 1000 false Chr01: 26357195-26358194 Populus trichocarpa
Potri.001G253700 2.0kb upstream 2.0kb upstream 6714 true Chr01: 26358195-26364908 Populus trichocarpa
Potri.001G253700 2.0kb upstream 2.0kb upstream 2000 false Chr01: 26362909-26364908 Populus trichocarpa
Potri.001G253700 2.0kb downstream 2.0kb downstream 6714 true Chr01: 26356195-26362908 Populus trichocarpa
Potri.001G253700 2.0kb downstream 2.0kb downstream 2000 false Chr01: 26356195-26358194 Populus trichocarpa
Potri.001G253700 5.0kb upstream 5.0kb upstream 9714 true Chr01: 26358195-26367908 Populus trichocarpa
Potri.001G253700 5.0kb upstream 5.0kb upstream 5000 false Chr01: 26362909-26367908 Populus trichocarpa
Potri.001G253700 5.0kb downstream 5.0kb downstream 9714 true Chr01: 26353195-26362908 Populus trichocarpa
Potri.001G253700 5.0kb downstream 5.0kb downstream 5000 false Chr01: 26353195-26358194 Populus trichocarpa
Potri.001G253700 10.0kb upstream 10.0kb upstream 14714 true Chr01: 26358195-26372908 Populus trichocarpa
Potri.001G253700 10.0kb upstream 10.0kb upstream 10000 false Chr01: 26362909-26372908 Populus trichocarpa
Potri.001G253700 10.0kb downstream 10.0kb downstream 14714 true Chr01: 26348195-26362908 Populus trichocarpa
Potri.001G253700 10.0kb downstream 10.0kb downstream 10000 false Chr01: 26348195-26358194 Populus trichocarpa

0 Protein Family

40 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.35        
cufflinks 0.841        
cufflinks 0.307       Low
cufflinks 0.494        
cufflinks 0.817        
cufflinks 0.976       High
cufflinks 0.437        
cufflinks 0.448        
cufflinks 0.559        
cufflinks 0.36       Low
cufflinks 0.449        
cufflinks 0.296       Low
cufflinks 1.315       High
cufflinks 1.017       High
cufflinks 0.725        
cufflinks 0.402        
cufflinks 0.558        
cufflinks 0.244       Low
cufflinks 1.101       High
cufflinks 0.566        
cufflinks 0.825        
cufflinks 0.406        
cufflinks 1.048       High
cufflinks 0.754        
cufflinks 0.989       High
cufflinks 9.133       High
cufflinks 9.362       High
cufflinks 8.904        
cufflinks 6.589        
cufflinks 8.908        

0 Strain