Gene : Potri.001G333500 P. trichocarpa v3.0
Defline:  (1 of 1) PTHR10742:SF229 - PROTOPORPHYRINOGEN OXIDASE 2, CHLOROPLASTIC/MITOCHONDRIAL Genomic Order:  3335
Name:  ? Potri.001G333500 Secondary Identifier:  ? PAC:27042242
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ptrichocarpa CHLOROPHYLL-SYN Populus trichocarpa pathologic  
Ptrichocarpa PWY-5918 Populus trichocarpa pathologic  
Ptrichocarpa HEME-BIOSYNTHESIS-II Populus trichocarpa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

3 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Potri.001G333500 0.5kb upstream 0.5kb upstream 7404 true Chr01: 33671856-33679259 Populus trichocarpa
Potri.001G333500 0.5kb upstream 0.5kb upstream 500 false Chr01: 33678760-33679259 Populus trichocarpa
Potri.001G333500 0.5kb downstream 0.5kb downstream 7404 true Chr01: 33671356-33678759 Populus trichocarpa
Potri.001G333500 0.5kb downstream 0.5kb downstream 500 false Chr01: 33671356-33671855 Populus trichocarpa
Potri.001G333500 1.0kb upstream 1.0kb upstream 7904 true Chr01: 33671856-33679759 Populus trichocarpa
Potri.001G333500 1.0kb upstream 1.0kb upstream 1000 false Chr01: 33678760-33679759 Populus trichocarpa
Potri.001G333500 1.0kb downstream 1.0kb downstream 7904 true Chr01: 33670856-33678759 Populus trichocarpa
Potri.001G333500 1.0kb downstream 1.0kb downstream 1000 false Chr01: 33670856-33671855 Populus trichocarpa
Potri.001G333500 2.0kb upstream 2.0kb upstream 8904 true Chr01: 33671856-33680759 Populus trichocarpa
Potri.001G333500 2.0kb upstream 2.0kb upstream 2000 false Chr01: 33678760-33680759 Populus trichocarpa
Potri.001G333500 2.0kb downstream 2.0kb downstream 8904 true Chr01: 33669856-33678759 Populus trichocarpa
Potri.001G333500 2.0kb downstream 2.0kb downstream 2000 false Chr01: 33669856-33671855 Populus trichocarpa
Potri.001G333500 5.0kb upstream 5.0kb upstream 11904 true Chr01: 33671856-33683759 Populus trichocarpa
Potri.001G333500 5.0kb upstream 5.0kb upstream 5000 false Chr01: 33678760-33683759 Populus trichocarpa
Potri.001G333500 5.0kb downstream 5.0kb downstream 11904 true Chr01: 33666856-33678759 Populus trichocarpa
Potri.001G333500 5.0kb downstream 5.0kb downstream 5000 false Chr01: 33666856-33671855 Populus trichocarpa
Potri.001G333500 10.0kb upstream 10.0kb upstream 16904 true Chr01: 33671856-33688759 Populus trichocarpa
Potri.001G333500 10.0kb upstream 10.0kb upstream 10000 false Chr01: 33678760-33688759 Populus trichocarpa
Potri.001G333500 10.0kb downstream 10.0kb downstream 16904 true Chr01: 33661856-33678759 Populus trichocarpa
Potri.001G333500 10.0kb downstream 10.0kb downstream 10000 false Chr01: 33661856-33671855 Populus trichocarpa

0 Protein Family

40 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.712        
cufflinks 0.324       Low
cufflinks 1.037        
cufflinks 1.861       High
cufflinks 0.667        
cufflinks 1.192        
cufflinks 0.141       Low
cufflinks 0.558        
cufflinks 0.668        
cufflinks 0.517        
cufflinks 0.563        
cufflinks 0.588        
cufflinks 0.828        
cufflinks 0.978        
cufflinks 0.856        
cufflinks 0.823        
cufflinks 1.446       High
cufflinks 1.529       High
cufflinks 0.897        
cufflinks 1.091        
cufflinks 0.49        
cufflinks 1.28        
cufflinks 1.003        
cufflinks 1.135        
cufflinks 4.999        
cufflinks 8.939        
cufflinks 8.571        
cufflinks 12.467       High
cufflinks 15.239       High
cufflinks 6.308        

0 Strain