Gene : Potri.001G195300 P. trichocarpa v3.0
Defline:  (1 of 1) PTHR11061//PTHR11061:SF30 - RNA M5U METHYLTRANSFERASE FAMILY // TRNA (URACIL(54)-C(5))-METHYLTRANSFERASE Genomic Order:  1953
Name:  ? Potri.001G195300 Secondary Identifier:  ? PAC:27040883
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Potri.001G195300 0.5kb upstream 0.5kb upstream 8696 true Chr01: 18236959-18245654 Populus trichocarpa
Potri.001G195300 0.5kb upstream 0.5kb upstream 500 false Chr01: 18245155-18245654 Populus trichocarpa
Potri.001G195300 0.5kb downstream 0.5kb downstream 8696 true Chr01: 18236459-18245154 Populus trichocarpa
Potri.001G195300 0.5kb downstream 0.5kb downstream 500 false Chr01: 18236459-18236958 Populus trichocarpa
Potri.001G195300 1.0kb upstream 1.0kb upstream 9196 true Chr01: 18236959-18246154 Populus trichocarpa
Potri.001G195300 1.0kb upstream 1.0kb upstream 1000 false Chr01: 18245155-18246154 Populus trichocarpa
Potri.001G195300 1.0kb downstream 1.0kb downstream 9196 true Chr01: 18235959-18245154 Populus trichocarpa
Potri.001G195300 1.0kb downstream 1.0kb downstream 1000 false Chr01: 18235959-18236958 Populus trichocarpa
Potri.001G195300 2.0kb upstream 2.0kb upstream 10196 true Chr01: 18236959-18247154 Populus trichocarpa
Potri.001G195300 2.0kb upstream 2.0kb upstream 2000 false Chr01: 18245155-18247154 Populus trichocarpa
Potri.001G195300 2.0kb downstream 2.0kb downstream 10196 true Chr01: 18234959-18245154 Populus trichocarpa
Potri.001G195300 2.0kb downstream 2.0kb downstream 2000 false Chr01: 18234959-18236958 Populus trichocarpa
Potri.001G195300 5.0kb upstream 5.0kb upstream 13196 true Chr01: 18236959-18250154 Populus trichocarpa
Potri.001G195300 5.0kb upstream 5.0kb upstream 5000 false Chr01: 18245155-18250154 Populus trichocarpa
Potri.001G195300 5.0kb downstream 5.0kb downstream 13196 true Chr01: 18231959-18245154 Populus trichocarpa
Potri.001G195300 5.0kb downstream 5.0kb downstream 5000 false Chr01: 18231959-18236958 Populus trichocarpa
Potri.001G195300 10.0kb upstream 10.0kb upstream 18196 true Chr01: 18236959-18255154 Populus trichocarpa
Potri.001G195300 10.0kb upstream 10.0kb upstream 10000 false Chr01: 18245155-18255154 Populus trichocarpa
Potri.001G195300 10.0kb downstream 10.0kb downstream 18196 true Chr01: 18226959-18245154 Populus trichocarpa
Potri.001G195300 10.0kb downstream 10.0kb downstream 10000 false Chr01: 18226959-18236958 Populus trichocarpa

0 Protein Family

40 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.755        
cufflinks 2.754       Low
cufflinks 3.5        
cufflinks 5.481        
cufflinks 2.186       Low
cufflinks 4.018        
cufflinks 6.647        
cufflinks 8.317       High
cufflinks 2.922       Low
cufflinks 13.26     High High
cufflinks 6.078        
cufflinks 7.017        
cufflinks 5.782        
cufflinks 2.637       Low
cufflinks 7.354        
cufflinks 5.152        
cufflinks 3.225       Low
cufflinks 6.81        
cufflinks 3.971        
cufflinks 6.035        
cufflinks 7.201        
cufflinks 6.356        
cufflinks 4.027        
cufflinks 6.225        
cufflinks 18.265        
cufflinks 22.187        
cufflinks 22.701        
cufflinks 26.604       High
cufflinks 20.613        
cufflinks 18.755        

0 Strain