Gene : Potri.002G198600 P. trichocarpa v3.0
Defline:  (1 of 2) 6.3.3.1 - Phosphoribosylformylglycinamidine cyclo-ligase / Phosphoribosylaminoimidazole synthetase Genomic Order:  1986
Name:  ? Potri.002G198600 Secondary Identifier:  ? PAC:27020116
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ptrichocarpa PWY-6121 Populus trichocarpa pathologic  
Ptrichocarpa PWY-841 Populus trichocarpa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Potri.002G198600 0.5kb upstream 0.5kb upstream 5510 true Chr02: 15950547-15956056 Populus trichocarpa
Potri.002G198600 0.5kb upstream 0.5kb upstream 500 false Chr02: 15950547-15951046 Populus trichocarpa
Potri.002G198600 0.5kb downstream 0.5kb downstream 5510 true Chr02: 15951047-15956556 Populus trichocarpa
Potri.002G198600 0.5kb downstream 0.5kb downstream 500 false Chr02: 15956057-15956556 Populus trichocarpa
Potri.002G198600 1.0kb upstream 1.0kb upstream 6010 true Chr02: 15950047-15956056 Populus trichocarpa
Potri.002G198600 1.0kb upstream 1.0kb upstream 1000 false Chr02: 15950047-15951046 Populus trichocarpa
Potri.002G198600 1.0kb downstream 1.0kb downstream 6010 true Chr02: 15951047-15957056 Populus trichocarpa
Potri.002G198600 1.0kb downstream 1.0kb downstream 1000 false Chr02: 15956057-15957056 Populus trichocarpa
Potri.002G198600 2.0kb upstream 2.0kb upstream 7010 true Chr02: 15949047-15956056 Populus trichocarpa
Potri.002G198600 2.0kb upstream 2.0kb upstream 2000 false Chr02: 15949047-15951046 Populus trichocarpa
Potri.002G198600 2.0kb downstream 2.0kb downstream 7010 true Chr02: 15951047-15958056 Populus trichocarpa
Potri.002G198600 2.0kb downstream 2.0kb downstream 2000 false Chr02: 15956057-15958056 Populus trichocarpa
Potri.002G198600 5.0kb upstream 5.0kb upstream 10010 true Chr02: 15946047-15956056 Populus trichocarpa
Potri.002G198600 5.0kb upstream 5.0kb upstream 5000 false Chr02: 15946047-15951046 Populus trichocarpa
Potri.002G198600 5.0kb downstream 5.0kb downstream 10010 true Chr02: 15951047-15961056 Populus trichocarpa
Potri.002G198600 5.0kb downstream 5.0kb downstream 5000 false Chr02: 15956057-15961056 Populus trichocarpa
Potri.002G198600 10.0kb upstream 10.0kb upstream 15010 true Chr02: 15941047-15956056 Populus trichocarpa
Potri.002G198600 10.0kb upstream 10.0kb upstream 10000 false Chr02: 15941047-15951046 Populus trichocarpa
Potri.002G198600 10.0kb downstream 10.0kb downstream 15010 true Chr02: 15951047-15966056 Populus trichocarpa
Potri.002G198600 10.0kb downstream 10.0kb downstream 10000 false Chr02: 15956057-15966056 Populus trichocarpa

0 Protein Family

40 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.451        
cufflinks 13.209     High High
cufflinks 3.354        
cufflinks 3.685        
cufflinks 2.867        
cufflinks 3.098        
cufflinks 1.674       Low
cufflinks 2.451        
cufflinks 4.644        
cufflinks 3.806        
cufflinks 2.347        
cufflinks 2.367        
cufflinks 1.229       Low
cufflinks 3.355        
cufflinks 3.547        
cufflinks 1.594       Low
cufflinks 1.96        
cufflinks 3.759        
cufflinks 1.475       Low
cufflinks 2.553        
cufflinks 3.996        
cufflinks 3.446        
cufflinks 2.801        
cufflinks 3.659        
cufflinks 89.312     High High
cufflinks 45.317     High  
cufflinks 52.787     High  
cufflinks 38.561     High  
cufflinks 88.412     High High
cufflinks 57.925     High  

0 Strain