Gene : Potri.002G162900 P. trichocarpa v3.0
Defline:  (1 of 1) PTHR12358//PTHR12358:SF43 - SPHINGOSINE KINASE // SPHINGOID LONG-CHAIN BASES KINASE 2, MITOCHONDRIAL Genomic Order:  1629
Name:  ? Potri.002G162900 Secondary Identifier:  ? PAC:27024154
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ptrichocarpa PWY-7039 Populus trichocarpa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Potri.002G162900 0.5kb upstream 0.5kb upstream 3764 true Chr02: 12299593-12303356 Populus trichocarpa
Potri.002G162900 0.5kb upstream 0.5kb upstream 500 false Chr02: 12302857-12303356 Populus trichocarpa
Potri.002G162900 0.5kb downstream 0.5kb downstream 3764 true Chr02: 12299093-12302856 Populus trichocarpa
Potri.002G162900 0.5kb downstream 0.5kb downstream 500 false Chr02: 12299093-12299592 Populus trichocarpa
Potri.002G162900 1.0kb upstream 1.0kb upstream 4264 true Chr02: 12299593-12303856 Populus trichocarpa
Potri.002G162900 1.0kb upstream 1.0kb upstream 1000 false Chr02: 12302857-12303856 Populus trichocarpa
Potri.002G162900 1.0kb downstream 1.0kb downstream 4264 true Chr02: 12298593-12302856 Populus trichocarpa
Potri.002G162900 1.0kb downstream 1.0kb downstream 1000 false Chr02: 12298593-12299592 Populus trichocarpa
Potri.002G162900 2.0kb upstream 2.0kb upstream 5264 true Chr02: 12299593-12304856 Populus trichocarpa
Potri.002G162900 2.0kb upstream 2.0kb upstream 2000 false Chr02: 12302857-12304856 Populus trichocarpa
Potri.002G162900 2.0kb downstream 2.0kb downstream 5264 true Chr02: 12297593-12302856 Populus trichocarpa
Potri.002G162900 2.0kb downstream 2.0kb downstream 2000 false Chr02: 12297593-12299592 Populus trichocarpa
Potri.002G162900 5.0kb upstream 5.0kb upstream 8264 true Chr02: 12299593-12307856 Populus trichocarpa
Potri.002G162900 5.0kb upstream 5.0kb upstream 5000 false Chr02: 12302857-12307856 Populus trichocarpa
Potri.002G162900 5.0kb downstream 5.0kb downstream 8264 true Chr02: 12294593-12302856 Populus trichocarpa
Potri.002G162900 5.0kb downstream 5.0kb downstream 5000 false Chr02: 12294593-12299592 Populus trichocarpa
Potri.002G162900 10.0kb upstream 10.0kb upstream 13264 true Chr02: 12299593-12312856 Populus trichocarpa
Potri.002G162900 10.0kb upstream 10.0kb upstream 10000 false Chr02: 12302857-12312856 Populus trichocarpa
Potri.002G162900 10.0kb downstream 10.0kb downstream 13264 true Chr02: 12289593-12302856 Populus trichocarpa
Potri.002G162900 10.0kb downstream 10.0kb downstream 10000 false Chr02: 12289593-12299592 Populus trichocarpa

0 Protein Family

40 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.895        
cufflinks 2.793       Low
cufflinks 4.024        
cufflinks 2.611       Low
cufflinks 3.915        
cufflinks 4.465        
cufflinks 5.047       High
cufflinks 5.557       High
cufflinks 2.989        
cufflinks 3.856        
cufflinks 4.254        
cufflinks 2.639       Low
cufflinks 3.004        
cufflinks 6.374       High
cufflinks 3.362        
cufflinks 3.246        
cufflinks 3.303        
cufflinks 2.807       Low
cufflinks 2.965        
cufflinks 5.081       High
cufflinks 4.399        
cufflinks 4.05        
cufflinks 3.79        
cufflinks 3.378        
cufflinks 6.58        
cufflinks 6.851        
cufflinks 8.905        
cufflinks 6.138        
cufflinks 9.736        
cufflinks 5.576        

0 Strain