Gene : Potri.002G061900 P. trichocarpa v3.0
Defline:  (1 of 2) 2.5.1.55 - 3-deoxy-8-phosphooctulonate synthase / Phospho-2-keto-3-deoxyoctonate aldolase Genomic Order:  619
Name:  ? Potri.002G061900 Secondary Identifier:  ? PAC:27023730
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ptrichocarpa PWY-1269 Populus trichocarpa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

4 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Potri.002G061900 0.5kb upstream 0.5kb upstream 6849 true Chr02: 4193940-4200788 Populus trichocarpa
Potri.002G061900 0.5kb upstream 0.5kb upstream 500 false Chr02: 4193940-4194439 Populus trichocarpa
Potri.002G061900 0.5kb downstream 0.5kb downstream 6849 true Chr02: 4194440-4201288 Populus trichocarpa
Potri.002G061900 0.5kb downstream 0.5kb downstream 500 false Chr02: 4200789-4201288 Populus trichocarpa
Potri.002G061900 1.0kb upstream 1.0kb upstream 7349 true Chr02: 4193440-4200788 Populus trichocarpa
Potri.002G061900 1.0kb upstream 1.0kb upstream 1000 false Chr02: 4193440-4194439 Populus trichocarpa
Potri.002G061900 1.0kb downstream 1.0kb downstream 7349 true Chr02: 4194440-4201788 Populus trichocarpa
Potri.002G061900 1.0kb downstream 1.0kb downstream 1000 false Chr02: 4200789-4201788 Populus trichocarpa
Potri.002G061900 2.0kb upstream 2.0kb upstream 8349 true Chr02: 4192440-4200788 Populus trichocarpa
Potri.002G061900 2.0kb upstream 2.0kb upstream 2000 false Chr02: 4192440-4194439 Populus trichocarpa
Potri.002G061900 2.0kb downstream 2.0kb downstream 8349 true Chr02: 4194440-4202788 Populus trichocarpa
Potri.002G061900 2.0kb downstream 2.0kb downstream 2000 false Chr02: 4200789-4202788 Populus trichocarpa
Potri.002G061900 5.0kb upstream 5.0kb upstream 11349 true Chr02: 4189440-4200788 Populus trichocarpa
Potri.002G061900 5.0kb upstream 5.0kb upstream 5000 false Chr02: 4189440-4194439 Populus trichocarpa
Potri.002G061900 5.0kb downstream 5.0kb downstream 11349 true Chr02: 4194440-4205788 Populus trichocarpa
Potri.002G061900 5.0kb downstream 5.0kb downstream 5000 false Chr02: 4200789-4205788 Populus trichocarpa
Potri.002G061900 10.0kb upstream 10.0kb upstream 16349 true Chr02: 4184440-4200788 Populus trichocarpa
Potri.002G061900 10.0kb upstream 10.0kb upstream 10000 false Chr02: 4184440-4194439 Populus trichocarpa
Potri.002G061900 10.0kb downstream 10.0kb downstream 16349 true Chr02: 4194440-4210788 Populus trichocarpa
Potri.002G061900 10.0kb downstream 10.0kb downstream 10000 false Chr02: 4200789-4210788 Populus trichocarpa

0 Protein Family

40 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.72        
cufflinks 0.522        
cufflinks 0.331        
cufflinks 1.085       High
cufflinks 0.107     Low Low
cufflinks 0.43        
cufflinks 0.716        
cufflinks 0.567        
cufflinks 0.886       High
cufflinks 0.547        
cufflinks 0.742        
cufflinks 0.879       High
cufflinks 0.66        
cufflinks 0.376        
cufflinks 0.502        
cufflinks 0.444        
cufflinks 0.683        
cufflinks 0.382        
cufflinks 0.347        
cufflinks 0.426        
cufflinks 0.313        
cufflinks 0.503        
cufflinks 0.33        
cufflinks 0.592        
cufflinks 0.545        
cufflinks 5.331        
cufflinks 6.715        
cufflinks 8.423        
cufflinks 7.56        
cufflinks 14.261       High

0 Strain