Gene : Potri.002G235200 P. trichocarpa v3.0
Defline:  (1 of 2) 1.3.5.5 - 15-cis-phytoene desaturase / Plant-type phytoene desaturase Genomic Order:  2352
Name:  ? Potri.002G235200 Secondary Identifier:  ? PAC:27023842
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ptrichocarpa CAROTENOID-PWY Populus trichocarpa pathologic  
Ptrichocarpa PWY-6475 Populus trichocarpa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

4 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Potri.002G235200 0.5kb upstream 0.5kb upstream 10101 true Chr02: 22872212-22882312 Populus trichocarpa
Potri.002G235200 0.5kb upstream 0.5kb upstream 500 false Chr02: 22881813-22882312 Populus trichocarpa
Potri.002G235200 0.5kb downstream 0.5kb downstream 10101 true Chr02: 22871712-22881812 Populus trichocarpa
Potri.002G235200 0.5kb downstream 0.5kb downstream 500 false Chr02: 22871712-22872211 Populus trichocarpa
Potri.002G235200 1.0kb upstream 1.0kb upstream 10601 true Chr02: 22872212-22882812 Populus trichocarpa
Potri.002G235200 1.0kb upstream 1.0kb upstream 1000 false Chr02: 22881813-22882812 Populus trichocarpa
Potri.002G235200 1.0kb downstream 1.0kb downstream 10601 true Chr02: 22871212-22881812 Populus trichocarpa
Potri.002G235200 1.0kb downstream 1.0kb downstream 1000 false Chr02: 22871212-22872211 Populus trichocarpa
Potri.002G235200 2.0kb upstream 2.0kb upstream 11601 true Chr02: 22872212-22883812 Populus trichocarpa
Potri.002G235200 2.0kb upstream 2.0kb upstream 2000 false Chr02: 22881813-22883812 Populus trichocarpa
Potri.002G235200 2.0kb downstream 2.0kb downstream 11601 true Chr02: 22870212-22881812 Populus trichocarpa
Potri.002G235200 2.0kb downstream 2.0kb downstream 2000 false Chr02: 22870212-22872211 Populus trichocarpa
Potri.002G235200 5.0kb upstream 5.0kb upstream 14601 true Chr02: 22872212-22886812 Populus trichocarpa
Potri.002G235200 5.0kb upstream 5.0kb upstream 5000 false Chr02: 22881813-22886812 Populus trichocarpa
Potri.002G235200 5.0kb downstream 5.0kb downstream 14601 true Chr02: 22867212-22881812 Populus trichocarpa
Potri.002G235200 5.0kb downstream 5.0kb downstream 5000 false Chr02: 22867212-22872211 Populus trichocarpa
Potri.002G235200 10.0kb upstream 10.0kb upstream 19601 true Chr02: 22872212-22891812 Populus trichocarpa
Potri.002G235200 10.0kb upstream 10.0kb upstream 10000 false Chr02: 22881813-22891812 Populus trichocarpa
Potri.002G235200 10.0kb downstream 10.0kb downstream 19601 true Chr02: 22862212-22881812 Populus trichocarpa
Potri.002G235200 10.0kb downstream 10.0kb downstream 10000 false Chr02: 22862212-22872211 Populus trichocarpa

0 Protein Family

40 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.014     Low  
cufflinks 0.027     Low  
cufflinks 0.069     Low High
cufflinks 0.027     Low  
cufflinks 0.009     Low  
cufflinks 0.099     Low High
cufflinks 0.018     Low  
cufflinks 0.023     Low  
cufflinks 0.353       High
cufflinks 0.02     Low  
cufflinks 0.01     Low  
cufflinks 0.2       High
cufflinks 0.003     Low Low
cufflinks 0.051     Low  
cufflinks 0.006     Low Low
cufflinks 0.013     Low  
cufflinks 0.008     Low  
cufflinks 0.014     Low  
cufflinks 0.004     Low Low
cufflinks 0.017     Low  
cufflinks 0.026     Low  
cufflinks 0.022     Low  
cufflinks 0.014     Low  
cufflinks 0.016     Low  
cufflinks 1.133        
cufflinks 4.307       High
cufflinks 6.088       High
cufflinks 3.477        
cufflinks 4.888       High
cufflinks 2.437        

0 Strain