Gene : Potri.002G186300 P. trichocarpa v3.0
Defline:  (1 of 3) K00231 - oxygen-dependent protoporphyrinogen oxidase (PPOX, hemY) Genomic Order:  1863
Name:  ? Potri.002G186300 Secondary Identifier:  ? PAC:27021499
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ptrichocarpa CHLOROPHYLL-SYN Populus trichocarpa pathologic  
Ptrichocarpa PWY-5918 Populus trichocarpa pathologic  
Ptrichocarpa HEME-BIOSYNTHESIS-II Populus trichocarpa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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3 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Potri.002G186300 0.5kb upstream 0.5kb upstream 5529 true Chr02: 14597092-14602620 Populus trichocarpa
Potri.002G186300 0.5kb upstream 0.5kb upstream 500 false Chr02: 14597092-14597591 Populus trichocarpa
Potri.002G186300 0.5kb downstream 0.5kb downstream 5529 true Chr02: 14597592-14603120 Populus trichocarpa
Potri.002G186300 0.5kb downstream 0.5kb downstream 500 false Chr02: 14602621-14603120 Populus trichocarpa
Potri.002G186300 1.0kb upstream 1.0kb upstream 6029 true Chr02: 14596592-14602620 Populus trichocarpa
Potri.002G186300 1.0kb upstream 1.0kb upstream 1000 false Chr02: 14596592-14597591 Populus trichocarpa
Potri.002G186300 1.0kb downstream 1.0kb downstream 6029 true Chr02: 14597592-14603620 Populus trichocarpa
Potri.002G186300 1.0kb downstream 1.0kb downstream 1000 false Chr02: 14602621-14603620 Populus trichocarpa
Potri.002G186300 2.0kb upstream 2.0kb upstream 7029 true Chr02: 14595592-14602620 Populus trichocarpa
Potri.002G186300 2.0kb upstream 2.0kb upstream 2000 false Chr02: 14595592-14597591 Populus trichocarpa
Potri.002G186300 2.0kb downstream 2.0kb downstream 7029 true Chr02: 14597592-14604620 Populus trichocarpa
Potri.002G186300 2.0kb downstream 2.0kb downstream 2000 false Chr02: 14602621-14604620 Populus trichocarpa
Potri.002G186300 5.0kb upstream 5.0kb upstream 10029 true Chr02: 14592592-14602620 Populus trichocarpa
Potri.002G186300 5.0kb upstream 5.0kb upstream 5000 false Chr02: 14592592-14597591 Populus trichocarpa
Potri.002G186300 5.0kb downstream 5.0kb downstream 10029 true Chr02: 14597592-14607620 Populus trichocarpa
Potri.002G186300 5.0kb downstream 5.0kb downstream 5000 false Chr02: 14602621-14607620 Populus trichocarpa
Potri.002G186300 10.0kb upstream 10.0kb upstream 15029 true Chr02: 14587592-14602620 Populus trichocarpa
Potri.002G186300 10.0kb upstream 10.0kb upstream 10000 false Chr02: 14587592-14597591 Populus trichocarpa
Potri.002G186300 10.0kb downstream 10.0kb downstream 15029 true Chr02: 14597592-14612620 Populus trichocarpa
Potri.002G186300 10.0kb downstream 10.0kb downstream 10000 false Chr02: 14602621-14612620 Populus trichocarpa

0 Protein Family

40 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.589        
cufflinks 3.835        
cufflinks 2.472       Low
cufflinks 8.488       High
cufflinks 4.629        
cufflinks 4.548        
cufflinks 6.923        
cufflinks 4.147        
cufflinks 1.735       Low
cufflinks 4.89        
cufflinks 9.199       High
cufflinks 4.769        
cufflinks 4.522        
cufflinks 3.753        
cufflinks 4.214        
cufflinks 9.634     High High
cufflinks 3.12        
cufflinks 11.175     High High
cufflinks 8.287     High High
cufflinks 1.862       Low
cufflinks 2.527       Low
cufflinks 8.323       High
cufflinks 3.286        
cufflinks 4.26        
cufflinks 8.947       High
cufflinks 12.07        
cufflinks 12.548        
cufflinks 11.568        
cufflinks 14.415        
cufflinks 12.627        

0 Strain