Gene : Potri.003G080900 P. trichocarpa v3.0
Defline:  (1 of 1) K01956 - carbamoyl-phosphate synthase small subunit (carA, CPA1) Genomic Order:  809
Name:  ? Potri.003G080900 Secondary Identifier:  ? PAC:26996295
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Sequence Feature Displayer

Ontology Annotation Displayer

8 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ptrichocarpa PWY-5686 Populus trichocarpa pathologic  
Ptrichocarpa GLUTAMINDEG-PWY Populus trichocarpa pathologic  
Ptrichocarpa PWY0-162 Populus trichocarpa pathologic  
Ptrichocarpa ARGSYNBSUB-PWY Populus trichocarpa pathologic  
Ptrichocarpa CITRULBIO-PWY Populus trichocarpa pathologic  
Ptrichocarpa PWY-4984 Populus trichocarpa pathologic  
Ptrichocarpa PWY-7211 Populus trichocarpa pathologic  
Ptrichocarpa ARGSYN-PWY Populus trichocarpa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

4 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Potri.003G080900 0.5kb upstream 0.5kb upstream 4628   true Chr03: 10905670-10910297 Populus trichocarpa
Potri.003G080900 0.5kb upstream 0.5kb upstream 500   false Chr03: 10909798-10910297 Populus trichocarpa
Potri.003G080900 0.5kb downstream 0.5kb downstream 4628   true Chr03: 10905170-10909797 Populus trichocarpa
Potri.003G080900 0.5kb downstream 0.5kb downstream 500   false Chr03: 10905170-10905669 Populus trichocarpa
Potri.003G080900 1.0kb upstream 1.0kb upstream 5128   true Chr03: 10905670-10910797 Populus trichocarpa
Potri.003G080900 1.0kb upstream 1.0kb upstream 1000   false Chr03: 10909798-10910797 Populus trichocarpa
Potri.003G080900 1.0kb downstream 1.0kb downstream 5128   true Chr03: 10904670-10909797 Populus trichocarpa
Potri.003G080900 1.0kb downstream 1.0kb downstream 1000   false Chr03: 10904670-10905669 Populus trichocarpa
Potri.003G080900 2.0kb upstream 2.0kb upstream 6128   true Chr03: 10905670-10911797 Populus trichocarpa
Potri.003G080900 2.0kb upstream 2.0kb upstream 2000   false Chr03: 10909798-10911797 Populus trichocarpa
Potri.003G080900 2.0kb downstream 2.0kb downstream 6128   true Chr03: 10903670-10909797 Populus trichocarpa
Potri.003G080900 2.0kb downstream 2.0kb downstream 2000   false Chr03: 10903670-10905669 Populus trichocarpa
Potri.003G080900 5.0kb upstream 5.0kb upstream 9128   true Chr03: 10905670-10914797 Populus trichocarpa
Potri.003G080900 5.0kb upstream 5.0kb upstream 5000   false Chr03: 10909798-10914797 Populus trichocarpa
Potri.003G080900 5.0kb downstream 5.0kb downstream 9128   true Chr03: 10900670-10909797 Populus trichocarpa
Potri.003G080900 5.0kb downstream 5.0kb downstream 5000   false Chr03: 10900670-10905669 Populus trichocarpa
Potri.003G080900 10.0kb upstream 10.0kb upstream 14128   true Chr03: 10905670-10919797 Populus trichocarpa
Potri.003G080900 10.0kb upstream 10.0kb upstream 10000   false Chr03: 10909798-10919797 Populus trichocarpa
Potri.003G080900 10.0kb downstream 10.0kb downstream 14128   true Chr03: 10895670-10909797 Populus trichocarpa
Potri.003G080900 10.0kb downstream 10.0kb downstream 10000   false Chr03: 10895670-10905669 Populus trichocarpa

0 Protein Family

40 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.999     High  
cufflinks 6.451        
cufflinks 5.282        
cufflinks 22.403     High High
cufflinks 2.064       Low
cufflinks 4.483        
cufflinks 5.542        
cufflinks 9.564     High  
cufflinks 8.034        
cufflinks 6.372        
cufflinks 8.555     High  
cufflinks 5.383        
cufflinks 8.626        
cufflinks 3.412       Low
cufflinks 6.06        
cufflinks 5.375        
cufflinks 3.849       Low
cufflinks 4.359        
cufflinks 9.07        
cufflinks 9.579        
cufflinks 9.083        
cufflinks 4.683        
cufflinks 10.56     High  
cufflinks 8.654     High  
cufflinks 23.457        
cufflinks 23.448        
cufflinks 22.629        
cufflinks 37.616     High High
cufflinks 37.046     High High
cufflinks 25.198        

0 Strain