Gene : Potri.003G017400 P. trichocarpa v3.0
Defline:  (1 of 2) 2.5.1.3//2.7.1.49//2.7.4.7 - Thiamine-phosphate diphosphorylase / TMP pyrophosphorylase // Hydroxymethylpyrimidine kinase // Phosphomethylpyrimidine kinase / Hydroxymethylpyrimidine phosphokinase Genomic Order:  174
Name:  ? Potri.003G017400 Secondary Identifier:  ? PAC:26999869
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ptrichocarpa PWY-6910 Populus trichocarpa pathologic  
Ptrichocarpa PWY-6890 Populus trichocarpa pathologic  
Ptrichocarpa PWY-6908 Populus trichocarpa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Potri.003G017400 0.5kb upstream 0.5kb upstream 6128   true Chr03: 2149824-2155951 Populus trichocarpa
Potri.003G017400 0.5kb upstream 0.5kb upstream 500   false Chr03: 2155452-2155951 Populus trichocarpa
Potri.003G017400 0.5kb downstream 0.5kb downstream 6128   true Chr03: 2149324-2155451 Populus trichocarpa
Potri.003G017400 0.5kb downstream 0.5kb downstream 500   false Chr03: 2149324-2149823 Populus trichocarpa
Potri.003G017400 1.0kb upstream 1.0kb upstream 6628   true Chr03: 2149824-2156451 Populus trichocarpa
Potri.003G017400 1.0kb upstream 1.0kb upstream 1000   false Chr03: 2155452-2156451 Populus trichocarpa
Potri.003G017400 1.0kb downstream 1.0kb downstream 6628   true Chr03: 2148824-2155451 Populus trichocarpa
Potri.003G017400 1.0kb downstream 1.0kb downstream 1000   false Chr03: 2148824-2149823 Populus trichocarpa
Potri.003G017400 2.0kb upstream 2.0kb upstream 7628   true Chr03: 2149824-2157451 Populus trichocarpa
Potri.003G017400 2.0kb upstream 2.0kb upstream 2000   false Chr03: 2155452-2157451 Populus trichocarpa
Potri.003G017400 2.0kb downstream 2.0kb downstream 7628   true Chr03: 2147824-2155451 Populus trichocarpa
Potri.003G017400 2.0kb downstream 2.0kb downstream 2000   false Chr03: 2147824-2149823 Populus trichocarpa
Potri.003G017400 5.0kb upstream 5.0kb upstream 10628   true Chr03: 2149824-2160451 Populus trichocarpa
Potri.003G017400 5.0kb upstream 5.0kb upstream 5000   false Chr03: 2155452-2160451 Populus trichocarpa
Potri.003G017400 5.0kb downstream 5.0kb downstream 10628   true Chr03: 2144824-2155451 Populus trichocarpa
Potri.003G017400 5.0kb downstream 5.0kb downstream 5000   false Chr03: 2144824-2149823 Populus trichocarpa
Potri.003G017400 10.0kb upstream 10.0kb upstream 15628   true Chr03: 2149824-2165451 Populus trichocarpa
Potri.003G017400 10.0kb upstream 10.0kb upstream 10000   false Chr03: 2155452-2165451 Populus trichocarpa
Potri.003G017400 10.0kb downstream 10.0kb downstream 15628   true Chr03: 2139824-2155451 Populus trichocarpa
Potri.003G017400 10.0kb downstream 10.0kb downstream 10000   false Chr03: 2139824-2149823 Populus trichocarpa

0 Protein Family

40 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.516        
cufflinks 0.512        
cufflinks 0.435        
cufflinks 0.495        
cufflinks 0.618        
cufflinks 0.599        
cufflinks 0.447        
cufflinks 0.476        
cufflinks 0.509        
cufflinks 0.58        
cufflinks 0.455        
cufflinks 0.425        
cufflinks 0.769        
cufflinks 1.035       High
cufflinks 0.618        
cufflinks 0.042     Low Low
cufflinks 0.505        
cufflinks 0.451        
cufflinks 0.08     Low Low
cufflinks 0.069     Low Low
cufflinks 0.648        
cufflinks 0.062     Low Low
cufflinks 0.502        
cufflinks 0.074     Low Low
cufflinks 1.466        
cufflinks 2.197        
cufflinks 2.835       High
cufflinks 3.011       High
cufflinks 3.225       High
cufflinks 1.97        

0 Strain