Gene : Potri.003G221600 P. trichocarpa v3.0
Defline:  (1 of 1) PTHR22594:SF20 - LYSINE--TRNA LIGASE Genomic Order:  2216
Name:  ? Potri.003G221600 Secondary Identifier:  ? PAC:26999754
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ptrichocarpa TRNA-CHARGING-PWY Populus trichocarpa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

3 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Potri.003G221600 0.5kb upstream 0.5kb upstream 6680   true Chr03: 21644036-21650715 Populus trichocarpa
Potri.003G221600 0.5kb upstream 0.5kb upstream 500   false Chr03: 21644036-21644535 Populus trichocarpa
Potri.003G221600 0.5kb downstream 0.5kb downstream 6680   true Chr03: 21644536-21651215 Populus trichocarpa
Potri.003G221600 0.5kb downstream 0.5kb downstream 500   false Chr03: 21650716-21651215 Populus trichocarpa
Potri.003G221600 1.0kb upstream 1.0kb upstream 7180   true Chr03: 21643536-21650715 Populus trichocarpa
Potri.003G221600 1.0kb upstream 1.0kb upstream 1000   false Chr03: 21643536-21644535 Populus trichocarpa
Potri.003G221600 1.0kb downstream 1.0kb downstream 7180   true Chr03: 21644536-21651715 Populus trichocarpa
Potri.003G221600 1.0kb downstream 1.0kb downstream 1000   false Chr03: 21650716-21651715 Populus trichocarpa
Potri.003G221600 2.0kb upstream 2.0kb upstream 8180   true Chr03: 21642536-21650715 Populus trichocarpa
Potri.003G221600 2.0kb upstream 2.0kb upstream 2000   false Chr03: 21642536-21644535 Populus trichocarpa
Potri.003G221600 2.0kb downstream 2.0kb downstream 8180   true Chr03: 21644536-21652715 Populus trichocarpa
Potri.003G221600 2.0kb downstream 2.0kb downstream 2000   false Chr03: 21650716-21652715 Populus trichocarpa
Potri.003G221600 5.0kb upstream 5.0kb upstream 11180   true Chr03: 21639536-21650715 Populus trichocarpa
Potri.003G221600 5.0kb upstream 5.0kb upstream 5000   false Chr03: 21639536-21644535 Populus trichocarpa
Potri.003G221600 5.0kb downstream 5.0kb downstream 11180   true Chr03: 21644536-21655715 Populus trichocarpa
Potri.003G221600 5.0kb downstream 5.0kb downstream 5000   false Chr03: 21650716-21655715 Populus trichocarpa
Potri.003G221600 10.0kb upstream 10.0kb upstream 16180   true Chr03: 21634536-21650715 Populus trichocarpa
Potri.003G221600 10.0kb upstream 10.0kb upstream 10000   false Chr03: 21634536-21644535 Populus trichocarpa
Potri.003G221600 10.0kb downstream 10.0kb downstream 16180   true Chr03: 21644536-21660715 Populus trichocarpa
Potri.003G221600 10.0kb downstream 10.0kb downstream 10000   false Chr03: 21650716-21660715 Populus trichocarpa

0 Protein Family

40 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 21.471        
cufflinks 17.042        
cufflinks 0.971       Low
cufflinks 2.829        
cufflinks 7.758       High
cufflinks 3.412       High
cufflinks 2.371        
cufflinks 1.157        
cufflinks 3.01        
cufflinks 1.206        
cufflinks 2.865        
cufflinks 2.465        
cufflinks 1.353        
cufflinks 3.238        
cufflinks 0.975       Low
cufflinks 1.047       Low
cufflinks 2.821        
cufflinks 3.148        
cufflinks 1.125       Low
cufflinks 1.492        
cufflinks 1.662        
cufflinks 0.849       Low
cufflinks 3.236        
cufflinks 1.376        
cufflinks 1.98        
cufflinks 2.65        
cufflinks 19.684        
cufflinks 19.858        
cufflinks 18.437        
cufflinks 19.28        

0 Strain