Gene : Potri.004G196200 P. trichocarpa v3.0
Defline:  (1 of 1) PF00742//PF03447 - Homoserine dehydrogenase (Homoserine_dh) // Homoserine dehydrogenase, NAD binding domain (NAD_binding_3) Genomic Order:  1962
Name:  ? Potri.004G196200 Secondary Identifier:  ? PAC:26989572
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Sequence Feature Displayer

Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ptrichocarpa HOMOSERSYN-PWY Populus trichocarpa pathologic  
Ptrichocarpa PWY-3001 Populus trichocarpa pathologic  
Ptrichocarpa PWY-724 Populus trichocarpa pathologic  
Ptrichocarpa THRESYN-PWY Populus trichocarpa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

3 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Potri.004G196200 0.5kb upstream 0.5kb upstream 6548 true Chr04: 20927127-20933674 Populus trichocarpa
Potri.004G196200 0.5kb upstream 0.5kb upstream 500 false Chr04: 20933175-20933674 Populus trichocarpa
Potri.004G196200 0.5kb downstream 0.5kb downstream 6548 true Chr04: 20926627-20933174 Populus trichocarpa
Potri.004G196200 0.5kb downstream 0.5kb downstream 500 false Chr04: 20926627-20927126 Populus trichocarpa
Potri.004G196200 1.0kb upstream 1.0kb upstream 7048 true Chr04: 20927127-20934174 Populus trichocarpa
Potri.004G196200 1.0kb upstream 1.0kb upstream 1000 false Chr04: 20933175-20934174 Populus trichocarpa
Potri.004G196200 1.0kb downstream 1.0kb downstream 7048 true Chr04: 20926127-20933174 Populus trichocarpa
Potri.004G196200 1.0kb downstream 1.0kb downstream 1000 false Chr04: 20926127-20927126 Populus trichocarpa
Potri.004G196200 2.0kb upstream 2.0kb upstream 8048 true Chr04: 20927127-20935174 Populus trichocarpa
Potri.004G196200 2.0kb upstream 2.0kb upstream 2000 false Chr04: 20933175-20935174 Populus trichocarpa
Potri.004G196200 2.0kb downstream 2.0kb downstream 8048 true Chr04: 20925127-20933174 Populus trichocarpa
Potri.004G196200 2.0kb downstream 2.0kb downstream 2000 false Chr04: 20925127-20927126 Populus trichocarpa
Potri.004G196200 5.0kb upstream 5.0kb upstream 11048 true Chr04: 20927127-20938174 Populus trichocarpa
Potri.004G196200 5.0kb upstream 5.0kb upstream 5000 false Chr04: 20933175-20938174 Populus trichocarpa
Potri.004G196200 5.0kb downstream 5.0kb downstream 11048 true Chr04: 20922127-20933174 Populus trichocarpa
Potri.004G196200 5.0kb downstream 5.0kb downstream 5000 false Chr04: 20922127-20927126 Populus trichocarpa
Potri.004G196200 10.0kb upstream 10.0kb upstream 16048 true Chr04: 20927127-20943174 Populus trichocarpa
Potri.004G196200 10.0kb upstream 10.0kb upstream 10000 false Chr04: 20933175-20943174 Populus trichocarpa
Potri.004G196200 10.0kb downstream 10.0kb downstream 16048 true Chr04: 20917127-20933174 Populus trichocarpa
Potri.004G196200 10.0kb downstream 10.0kb downstream 10000 false Chr04: 20917127-20927126 Populus trichocarpa

0 Protein Family

40 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.527        
cufflinks 0.363        
cufflinks 0.289       Low
cufflinks 0.348       Low
cufflinks 0.322       Low
cufflinks 0.653        
cufflinks 0.529        
cufflinks 0.278       Low
cufflinks 0.525        
cufflinks 0.689        
cufflinks 0.883       High
cufflinks 0.56        
cufflinks 0.68        
cufflinks 0.498        
cufflinks 0.389        
cufflinks 0.553        
cufflinks 1.879       High
cufflinks 0.693        
cufflinks 0.662        
cufflinks 0.292       Low
cufflinks 0.883       High
cufflinks 0.497        
cufflinks 0.675        
cufflinks 0.94       High
cufflinks 8.566        
cufflinks 11.754        
cufflinks 9.484        
cufflinks 13.97       High
cufflinks 12.998       High
cufflinks 10.582        

0 Strain