Gene : Potri.T174200 P. trichocarpa v3.0
Defline:  (1 of 2) PTHR21145//PTHR21145:SF1 - CHORISMATE MUTASE // CHORISMATE MUTASE 2 Genomic Order:  1
Name:  ? Potri.T174200 Secondary Identifier:  ? PAC:26993311
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ptrichocarpa PWY-3462 Populus trichocarpa pathologic  
Ptrichocarpa PWY-3481 Populus trichocarpa pathologic  
Ptrichocarpa PWY-3461 Populus trichocarpa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Potri.T174200 0.5kb upstream 0.5kb upstream 3545 true scaffold_1296: 2063-5607 Populus trichocarpa
Potri.T174200 0.5kb upstream 0.5kb upstream 500 false scaffold_1296: 2063-2562 Populus trichocarpa
Potri.T174200 0.5kb downstream 0.5kb downstream 3545 true scaffold_1296: 2563-6107 Populus trichocarpa
Potri.T174200 0.5kb downstream 0.5kb downstream 500 false scaffold_1296: 5608-6107 Populus trichocarpa
Potri.T174200 1.0kb upstream 1.0kb upstream 4045 true scaffold_1296: 1563-5607 Populus trichocarpa
Potri.T174200 1.0kb upstream 1.0kb upstream 1000 false scaffold_1296: 1563-2562 Populus trichocarpa
Potri.T174200 1.0kb downstream 1.0kb downstream 4045 true scaffold_1296: 2563-6607 Populus trichocarpa
Potri.T174200 1.0kb downstream 1.0kb downstream 1000 false scaffold_1296: 5608-6607 Populus trichocarpa
Potri.T174200 2.0kb upstream 2.0kb upstream 5045 true scaffold_1296: 563-5607 Populus trichocarpa
Potri.T174200 2.0kb upstream 2.0kb upstream 2000 false scaffold_1296: 563-2562 Populus trichocarpa
Potri.T174200 2.0kb downstream 2.0kb downstream 5045 true scaffold_1296: 2563-7607 Populus trichocarpa
Potri.T174200 2.0kb downstream 2.0kb downstream 2000 false scaffold_1296: 5608-7607 Populus trichocarpa
Potri.T174200 5.0kb upstream 5.0kb upstream 5607 true scaffold_1296: 1-5607 Populus trichocarpa
Potri.T174200 5.0kb upstream 5.0kb upstream 2562 false scaffold_1296: 1-2562 Populus trichocarpa
Potri.T174200 5.0kb downstream 5.0kb downstream 7639 true scaffold_1296: 2563-10201 Populus trichocarpa
Potri.T174200 5.0kb downstream 5.0kb downstream 4594 false scaffold_1296: 5608-10201 Populus trichocarpa
Potri.T174200 10.0kb upstream 10.0kb upstream 5607 true scaffold_1296: 1-5607 Populus trichocarpa
Potri.T174200 10.0kb upstream 10.0kb upstream 2562 false scaffold_1296: 1-2562 Populus trichocarpa
Potri.T174200 10.0kb downstream 10.0kb downstream 7639 true scaffold_1296: 2563-10201 Populus trichocarpa
Potri.T174200 10.0kb downstream 10.0kb downstream 4594 false scaffold_1296: 5608-10201 Populus trichocarpa

0 Protein Family

40 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.288        
cufflinks 0.886        
cufflinks 1.113        
cufflinks 0.541       Low
cufflinks 1.306        
cufflinks 1.081        
cufflinks 0.878        
cufflinks 0.951        
cufflinks 1.505        
cufflinks 1.09        
cufflinks 1.122        
cufflinks 0.88        
cufflinks 0.64       Low
cufflinks 0.974        
cufflinks 0.912        
cufflinks 0.442       Low
cufflinks 1.103        
cufflinks 1.265        
cufflinks 0.948        
cufflinks 6.358       High
cufflinks 0.779        
cufflinks 0.798        
cufflinks 1.476        
cufflinks 1.056        
cufflinks 1.019        
cufflinks 0.111     Low Low
cufflinks 0.203     Low Low
cufflinks 0.45        
cufflinks 1.164        
cufflinks 0.546        

0 Strain